Pectobacterium parmentieri RNS 08-42-1A: A8F97_07465
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Entry
A8F97_07465 CDS
T04513
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
ppar
Pectobacterium parmentieri RNS 08-42-1A
Brite
KEGG Orthology (KO) [BR:
ppar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ppar03016
]
A8F97_07465
Enzymes [BR:
ppar01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
A8F97_07465
Transfer RNA biogenesis [BR:
ppar03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
A8F97_07465
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
Motif
Other DBs
NCBI-ProteinID:
AOR58744
UniProt:
A0A8B3F6U6
LinkDB
All DBs
Position
complement(1683222..1684346)
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AA seq
374 aa
AA seq
DB search
MNYQLITSDIGLQQICAQAQRFPQVALDTEFVRTRTYYPQLGLIQLYDGEQLSLIDPLTI
TDWAPFQALLRDEQVTKFLHAGSEDLEVFLNTFGTLPTPFIDTQILAAFLGKPLSYGFAA
LVADYMGVTLDKSESRTDWLARPLSEKQCDYAAADVFYLLPMAIQLVTDTDAAGWMNAAL
DECLLLCQRKQDILAPALAYREFGNAWQLRGRNLACLQRLAEWRLRKARERDSAVNFVVR
EENLLQVARCLPSSLGELSSLGLSGPEIRYHGKTLLDCVAQTDGIADVDCPPPVINLIDH
PGYKKAFKDIKALVQRASEQSGLSAELLASRRQINRLLNWHWKLAAQDGNTPEMLSGWRG
QIYGDELRDIVQGY
NT seq
1125 nt
NT seq
+upstream
nt +downstream
nt
ttgaattatcagttgatcacttccgacatcgggttacaacagatctgcgcccaggcgcaa
cgctttccgcaggtggcattggacacggagttcgtcagaactcgcacgtattacccgcaa
ttagggttgattcaattgtatgacggtgaacagctttcgcttatcgatccgttaacgatt
accgactgggctccttttcaggcgttgctgcgtgacgagcaggtcactaaatttctgcat
gcaggcagcgaggatctggaagtgtttctcaatacgtttggaacactgccgacgcctttc
attgatacacagattctggccgcatttttaggcaagccactttcttatggctttgctgcg
ctggtggccgactacatgggcgtgacgctggataaaagcgagtcgagaacggactggctc
gcccgtccgctgagcgaaaaacagtgtgattacgcggccgctgatgtgttctacctgctg
ccgatggccattcaactggtgacggataccgacgctgcggggtggatgaacgccgcgttg
gacgagtgtctcctgctttgtcagcgtaaacaggatattttagccccggcattggcctat
cgtgaatttggcaacgcctggcagctacgtggccggaatttggcgtgtctccaacgtctg
gctgagtggcgtttgcgcaaagcgcgtgagcgggacagcgcggtgaattttgtcgtgcgt
gaagagaatcttttgcaagtggcgcgttgcctgccgtcttcgctgggggagctgagttct
ctggggctaagcggcccggagatccgctaccacggaaaaacgctgctggactgtgtggca
caaacggacggcattgctgacgtggattgcccaccgccagtgattaatctgatcgaccat
cccggttataaaaaagcgtttaaagatatcaaggcgttggtacagcgggcgagtgaacag
agcggcttatccgccgaattattggcatcacgtcgtcaaattaatcgcctgctgaactgg
cactggaaattagcggcgcaagacgggaacacaccggaaatgttgtccggctggcgtggc
cagatatatggcgatgaactgcgtgacatcgtacagggctattaa
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