Pectobacterium parmentieri RNS 08-42-1A: A8F97_11735
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Entry
A8F97_11735 CDS
T04513
Name
(GenBank) ATP-dependent RNA helicase DbpA
KO
K05591
ATP-dependent RNA helicase DbpA [EC:
5.6.2.6
]
Organism
ppar
Pectobacterium parmentieri RNS 08-42-1A
Brite
KEGG Orthology (KO) [BR:
ppar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ppar03009
]
A8F97_11735
Enzymes [BR:
ppar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
A8F97_11735
Ribosome biogenesis [BR:
ppar03009
]
Prokaryotic type
rRNA helicases
A8F97_11735
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
CMS1
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
AOR59570
UniProt:
A0A8B3FNB8
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All DBs
Position
complement(2583581..2584963)
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AA seq
460 aa
AA seq
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MSTTSFSSLALPAEQLSNLNELGYTDMTPVQAATLPAVLSGADVRAKAKTGSGKTAAFGI
GLLDRIVVSDFTTQALVLCPTRELADQVSKELRRLARFAQNIKILTLCGGQPMGQQLDSL
VHAPHIVVGTPGRIQDHLRKRSLSLDSLKVLVLDEADRMLDMGFTDAIDDVISYTPSDRQ
TLLFSATYPEEIEQISARVQRQPQRFEIADNVEESAIEQRFYETTKEQRLPLLIAILSHY
QPASCVVFCNTKRDCQSVFDALDMRGISVSALHGDLEQRDRDQVLVRFANRSCRVLVATD
VAARGLDIKELALVVNFELAFDPEVHVHRIGRTGRAGTQGLAVSLCTPQEMNRANLIEDY
LGMRIKWTSADEISRSGEVALEPEMMTLCIDGGRKAKIRPGDILGALTGDAGLTAAEVGK
IDMFPLHAYVAIRKDSAKRALQQFQKGKIKGKSCKARLLK
NT seq
1383 nt
NT seq
+upstream
nt +downstream
nt
gtgagtacaacctctttttcttccctcgcgctgccagcagagcagttatccaatcttaat
gaactgggctataccgacatgacgccagtccaggcggcgacgttgcccgctgttctgagt
ggcgcggacgtgcgggccaaggcgaaaaccggtagcggcaaaacggcggcatttggcatt
gggctactggatcgtattgtcgtgagcgactttacgacacaggcgttggtgctgtgcccg
acgcgtgaactggccgatcaggtgagcaaagagctgcgtcgtctggcgcgttttgcacaa
aacattaagattctgacactgtgcggcggtcagccgatggggcagcagctcgattcactg
gttcacgcaccgcatattgttgttgggacgccgggacgtattcaggatcatttacgcaag
cgatcactgtccttggatagcctgaaagtgctggtgttggatgaagcggatcgcatgctg
gacatgggttttactgacgccattgatgatgtcatttcctatacgccgtccgatcgtcaa
acgttactattttctgctacctatcccgaagagatcgaacagatcagcgcacgcgttcag
cgccagccgcagcgtttcgagattgcagataacgtcgaagagtcagctattgagcaacgt
ttctacgagacgacgaaagagcaacgcctgccgctgttgattgccattctgagccattat
caaccagcctcctgcgtggtgttctgcaacacgaagcgtgattgccagagcgtatttgac
gcactagacatgcgtggaattagcgtctcggcgctgcatggcgatctggaacagcgcgac
cgcgatcaggttctggtacgctttgctaatcgtagctgtcgtgtgctggtcgcaaccgat
gttgcggctcgcggtctcgatatcaaggagctggcgctggtggtgaattttgagctggct
ttcgatcctgaagttcacgtacaccgcattggcagaacaggccgcgcgggtacgcagggg
ctggctgtaagcctgtgtacgccacaggaaatgaatcgcgctaatctgattgaagattat
ctcggtatgcgaattaaatggacatcggcggatgaaattagccgcagtggtgaggtcgcg
ctcgaacctgagatgatgacgctatgcatcgatggtggcagaaaagccaaaatccgtccc
ggcgatatcctcggcgcgttaacgggtgatgcgggattaacggcagcggaagttgggaag
attgatatgttccctctgcatgcttatgtggctatccgtaaagacagcgctaaacgtgcg
ctgcagcagttccagaaaggtaaaatcaaagggaaaagttgtaaggccagattgttaaag
tag
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