Pectobacterium parmentieri RNS 08-42-1A: A8F97_14375
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Entry
A8F97_14375 CDS
T04513
Name
(GenBank) rhamnogalacturonate lyase
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
ppar
Pectobacterium parmentieri RNS 08-42-1A
Brite
KEGG Orthology (KO) [BR:
ppar00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
A8F97_14375
Enzymes [BR:
ppar01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
A8F97_14375
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Gene cluster
GFIT
Motif
Pfam:
CBM-like
fn3_3
Rhamnogal_lyase
CarboxypepD_reg
CarbopepD_reg_2
NOMO1-like_2nd
EMC7_beta-sandw
SdrD_B
Motif
Other DBs
NCBI-ProteinID:
AOR60073
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Position
complement(3168504..3170186)
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AA seq
560 aa
AA seq
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MLAPYGYSAQDNAVSLSVSGLNTVLDNGLLKVTFGEDGSAVSMVTGGKNIVTNLSGAARD
PSKTRSAYLDYYVKGVKDFVPERVEVLRNDRDMAHVAYIDDRGGLLKLEYHLIMRRGVSG
LYSYVVAENSGSQDVNVSELRNVYRFDPARLDHLYSGVRQGKPLLYRELEASPKVQDETW
RLPDGSIYSKYDFAGYMRAVPFWGVFGNGVGAWLIHGNREYFSGDALKQDLLVHQDAIIL
NYMTGSHFGTPDMKAPPGWKKFYGPWLLYINQGDTKQMLADAQRQALTETVSWPYQWVND
SRYAFERTQVSGRVASQQPVTVVLSSSLDEPFDMQTRGYSYQATTDSQGNFAIPHVRPGN
YHLTVYANSGTQPGVLAEQTLSVSGDKKVLPVITLPKAEPIVWAIGQANRQASEFRFGNE
ARNTRWQHEVPANLTFDIGRSDYQHDWYYAQTKPGKWDIRFALKPEKKTYFLNVALAAAS
NSGMSEPSTPQLAVMVNGTTLETLTYENDKTIYRGALQSGRYHVARIPVSSRLLKNGNNT
ITLQLKGGSVMYDVVTLSEE
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
atgctggcaccctatggctatagtgcgcaggataatgccgtgtcgttatccgtttcgggc
ttgaataccgtgctggataatggcttgctgaaagtcacattcggtgaggatggcagcgcg
gtgagcatggtgacggggggtaaaaatatcgtcaccaacttgtccggtgcggcacgtgac
ccgagcaaaacccgtagtgcttacctcgactattacgttaaaggcgtcaaagatttcgtc
cccgagcgcgtggaggtgttgcgtaacgatcgtgacatggcgcatgtggcctatattgac
gatcgcggtgggctgctaaagctcgaatatcacctgattatgcggcgtggcgttagcggg
ctttatagctatgtggtggcggaaaatagtggaagtcaggatgttaacgtcagtgaactg
cgtaacgtttatcgcttcgatcctgcgcggttagaccacctctacagcggcgttcgtcag
ggcaaaccgctgctttatcgcgagcttgaggcctcaccaaaggtgcaggatgaaacctgg
cggttgcctgatggcagcatttattccaaatatgatttcgctggctacatgcgtgccgtg
cctttctggggcgttttcggtaacggcgtaggggcatggctgattcacggcaatcgggag
tatttctccggcgatgcgctcaagcaggatttgctggtgcatcaggatgcgatcattctg
aactatatgacgggttcgcactttggtacgccggatatgaaagccccgccgggctggaaa
aaattctacggaccgtggctgctctacattaaccagggcgataccaagcagatgctagcg
gatgcacagcgtcaggcgctgacggaaacggtgagttggccgtaccaatgggtgaacgac
tcccgctatgcgtttgaacgcacgcaggttagcggacgcgttgctagccagcagccagtc
acagtcgtgctttcatcatcattggatgagccgtttgatatgcagacccgcggttattcg
tatcaggcaacgacagactcacagggaaattttgctattcctcatgtccgtccgggcaat
taccatctaaccgtgtacgccaacagcggtacgcagccaggggtattggcagagcaaacg
ctgtccgtttccggtgataagaaagtgctaccagtgataacactgccaaaagctgaaccg
attgtctgggcgattggacaggcaaaccggcaggcgagcgaatttcgctttggtaacgag
gcgcgcaatacccgctggcagcatgaggttccggcaaatctgacgttcgatattggccgt
agcgactatcagcacgactggtactacgcacagaccaagccgggaaaatgggatatccgt
tttgctctaaaacctgaaaagaaaacctatttcctgaatgtcgctctggcggcggcgagc
aatagcggcatgagtgaaccgtccacgccacagttggcggtcatggtcaacggcactacg
ctggagacgttgacttacgagaacgacaaaactatctatcgtggtgcgctacagagcggt
cgttatcacgttgcgcgtatccccgtgtcatcccgtctcctgaaaaacggcaacaacacc
atcacactgcaattaaaaggcggtagcgtgatgtatgacgtggtgacgttaagcgaggaa
taa
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