Pectobacterium parmentieri RNS 08-42-1A: A8F97_14895
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Entry
A8F97_14895 CDS
T04513
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
ppar
Pectobacterium parmentieri RNS 08-42-1A
Pathway
ppar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A8F97_14895
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppar03019
]
A8F97_14895
03016 Transfer RNA biogenesis [BR:
ppar03016
]
A8F97_14895
Enzymes [BR:
ppar01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
A8F97_14895
Messenger RNA biogenesis [BR:
ppar03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
A8F97_14895
Transfer RNA biogenesis [BR:
ppar03016
]
Prokaryotic type
tRNA degradation factors
A8F97_14895
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
RNase_PH_C
KH_1
S1_RRP5
KH_2
S1_2
OB_RRP5_4th
KH-I_KHDC4-BBP
DUF4172
aRib
KH_SLS1_2
Spt6_S1
Motif
Other DBs
NCBI-ProteinID:
AOR60173
UniProt:
A0A0H3I2M8
LinkDB
All DBs
Position
complement(3285306..3287426)
Genome browser
AA seq
706 aa
AA seq
DB search
MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGAKNAKPGQSFFPLT
VNYQERTYAAGRFPGGFFRREGRPSEGETLISRLIDRPIRPLFPEGFLNEVQVIATVVSV
NPQVNPDIVAMIGASAALSLSGIPFSGPIGAARVGYLNDQYVLNPTTDELKESRLDLVVA
GTQGAVLMVESEAEVLSEDQMLGAVVFGHDQQQIVIENINSLVAEAGKPKWEWHAPEVNV
SLEQRVQALSEARLGDAYRITEKQERYAQVNVIKADVVAALQAEDETLNAGEIQEILGNI
EKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTER
DAQTIDELTGERTDRFLLHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPKANE
FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKSAVAGIAMGLVKEGDNFVVLSD
ILGDEDHLGDMDFKVAGSREGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQA
ISTPRGDISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAST
DGEKAKHAIRRIEEITAEIEVGRVYQGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE
KVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEANAQTQEAAAPSSEE
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
ttgctgaatccgatcgttcgtaagtttcaatatggtcagcataccgtcacgttagagacc
ggtatgatggcacgccaggctaccgccgctgtaatggtaagcatggatgacactgcggta
ttcgttaccgttgtcggcgctaaaaatgctaaaccaggccaaagtttcttcccgttgacg
gttaactatcaggagcgtacctacgctgctggacgtttccccggtggttttttccgccgt
gaaggtcgcccaagcgaaggcgaaacgctgatttctcgtctgattgaccgtccgattcgc
cctctgttcccagaaggcttcctgaatgaagttcaggtgattgccactgtcgtttccgtt
aacccacaggttaaccctgacatcgttgccatgattggtgcttctgcggcgctgagcctg
tctggtatcccgttcagcggtcctatcggtgcagcacgcgtcggttacctgaacgaccag
tatgtcctgaacccaacgacagatgagctgaaagaaagccgtctggatctggttgttgca
ggtacacaaggcgcagttctgatggtggaatcagaagctgaagtgctgagtgaagatcag
atgctgggtgcagtcgtgtttggtcacgaccaacagcagatcgttatcgaaaacatcaac
tcactggttgcagaagcgggcaaaccgaagtgggaatggcatgcgccagaagttaatgtt
tctttagagcaacgtgtacaggctctgtctgaagcacgtttgggtgacgcttaccgtatc
accgaaaaacaagagcgttatgcacaagttaacgtcatcaaagctgacgttgttgctgcg
ctgcaagccgaagatgaaacgctgaatgctggtgagatccaggaaattctgggcaacatc
gagaaaaatgtcgtgcgtagccgtgtactggctggcgaaccgcgtatcgatggccgtgaa
aaagacatgattcgtggtcttgatgtgcgtactggtgtactgccacgtacccacggttct
gcgttgttcacccgtggtgaaacgcaggcgctggtcactgcaacgttgggtactgagcgt
gacgcgcagaccatcgacgaactgaccggtgaacgtaccgatcgcttcctgctacactac
aacttccctccgtactctgtcggtgaaaccgggatggttggctcgcctaagcgtcgtgaa
attggtcacggtcgtctggctaagcgcggtgtgttggctgttatgccgaaggcgaacgaa
ttcccgtacaccgtgcgtgtggtctctgaaattacggaatctaacggttcttcttccatg
gcgtctgtctgcggtgcttctctggcactgatggatgcaggtgtgccgatcaaatcagcc
gttgcgggtattgcgatgggtctggtgaaagaaggcgacaactttgttgttctgtccgac
attctgggtgatgaagatcacctgggcgatatggactttaaagttgctggtagtcgtgaa
ggtatcactgcgctgcagatggatatcaagatcgaagggattacccgtgagatcatgcag
gttgctttgaatcaagccaagggtgcgcgtttgcacattctgggtgtgatggagcaggca
atcagcacgccgcgtggcgatatctctgaattcgcaccgcgtattcacaccatcaaaatc
agtaccgataagatcaaagatgtgatcggtaaaggtggttctgtgatccgtgcgctgacg
gaagagactggcacgactattgaaattgaagacgatggtactgtgaagatcgcttcaact
gacggcgaaaaagcgaaacacgcaattcgtcgtattgaagagatcactgccgaaatcgaa
gttggccgcgtgtatcagggtaaagtgactcgcatcgttgactttggtgctttcgtcgct
attggcggtggcaaagaaggcctggtgcatatttctcagatcgctgacaagcgcgtagag
aaagtgactgactacctgcagatgggtcaggaagtgccggtcaaggttctggaagttgat
cgtcagggccgcgtgcgcttaagcatcaaagaagccaatgcacaaactcaggaagcggca
gctccgtcttctgaggaataa
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