Pectobacterium parmentieri RNS 08-42-1A: A8F97_16640
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Entry
A8F97_16640 CDS
T04513
Name
(GenBank) type IV secretion protein Rhs
Organism
ppar
Pectobacterium parmentieri RNS 08-42-1A
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RHS_repeat
TEN_YD-shell
DUF6531
PAAR_motif
RHS
prePAAR_I
Beta-prop_WDR19_1st
Motif
Other DBs
NCBI-ProteinID:
AOR60508
LinkDB
All DBs
Position
complement(3669418..3673557)
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AA seq
1379 aa
AA seq
DB search
MFEAARVGDGIGHSSALTGMILGTIAGGLIAAAGGIAAGALLVAGLGSCVVGGVLLIGLS
AAVGWATGELAEKVRDGIADSFASSMSKAGTIDEGSPTVFINGMKAAMAILSIASCNKDG
PSMQVAEGSATVYINNQPASRLGDKVNCGATITEGSSNVFIGGATKPMLPIRSEVPAWLY
KASDLTLLFAGLIGGVGGMAGKAGKLGKLLRELPGLNKLQRLACRFGVLMTSIAAGGIIA
RPIDIVSGQKFLADEEELDFVLPSRLPVYWQRCWRSGNPGDSVLGKGWSLFWETTLTCYQ
DGLVWRAPSGDLISFPFVPVGQRSYCPAEKRWLEHHQDESWSVYGPDGEVWSYTALSPQG
KAVLARIAEPCGHDILFFWNDDDTLQALTDSAGRHLTCRYRDGRLDSVWLDESTCLVHYT
YNAQRQLITVTGRGGSVRRRFTWHDDGLMASHEEASGLLSEYQWQEIADLPRVVAYRNSA
GEQLTLEYDFAGQRRTARREDGLIAQWLLDDEGHVTHFTDYDGRETTLSYADGELCDVIM
PGGASRKTTWDDYGRLLSETDPLGRETCYQWYRLTGHITLVTYPDGSREQMQYDDLNRLV
EEIDARGNSTRYQYPTAQESLPDSITDALGGTVTLVWNRQGLLTARTDCSGQCSTFEYDH
DGQLLASVDAEGHTTRREWDACGHLTSVIYPDGRRETLRWNARGQLQAWRDAQNSEVRWH
YNVLGQPVSVTDRLRRTTRWHYDARGLLLRLENGNGAAYQFGYDAVGRLVNEQRVDGVEL
TFHYDAAGHLCQRSQRGHAANDEAISHIYQHDAAGQLVRREHAHAVFHYQHNNRGQLLSL
KREPTGEGLALGLTADEVRLTYDAAGDLSGEHGSEGDIGYTRDALGNVSALSLPDGDTLR
WLRYGSGHVSAVKFNHQVVSEFTRDRLHREISRTQGRRTQQRAYDSLGRLTSQRSGLWDV
AEPEQQLLSRALRYTASGELASVRDSLRGDVQYDYDAEGRLLKRIDVHWQVHHRAYGYDA
ADNLQDSAYSPSARPLSDNRLLNWRHLWNQYDGQGNLIRRREGTTEQFYQYDADNRLVEA
RGRGPQGEFVARYGYDALGRRTRKTVTWGDSGKQEETRFLWEGFRLLQARQADRTETYLY
DPTIWWSPLARITQQPGAPDGDIRWFNTELNGAPLEMTDAEGAVRWSGDYGSFGAINGQT
QDSEGLRHGKPVESQSLRYAGQYADEETGLHYNLFRYYDPTVGRFTTQDPIGLAGGLNLY
AYAPNPLGWVDPLGLAKILTDGVVYRMGSGTDSNLTPRPGKDTTTGLSTTIEKPSNGKYQ
TLDVKTLNDGGLDVVKDGKNHASVRPSNDPDMSRLREWADTRGTEKSSSYTKTVKKSCG
NT seq
4140 nt
NT seq
+upstream
nt +downstream
nt
atgtttgaagctgcgcgcgttggcgatggaataggacactccagtgctctgactggcatg
atcctgggcaccatcgctggcggattgattgctgccgccggcggtattgcagccggtgct
ctgcttgtggcggggctgggctcctgtgtggtgggtggcgtgttactgattggcctcagt
gctgcggtggggtgggcgacgggcgagctggcagaaaaggttcgtgacggcattgccgac
tcctttgccagcagcatgtcaaaggccggcacgattgacgagggctcacccacggtcttt
atcaacggcatgaaggccgccatggctatcctgagtatagccagttgcaataaagacggc
ccttccatgcaggtggcggagggctccgcaacggtctacatcaacaaccagcccgcctcc
cgtctgggggacaaggtgaactgcggtgccactatcacagaaggctcatccaatgtgttc
attgggggggcgacgaaacccatgctgccaatccggtcagaagtgccggcctggctctat
aaagcctctgatttaacgctgcttttcgccgggctgattggcggggtggggggcatggcg
ggcaaagccggaaaactgggtaagctgctgcgggaacttcccggtctcaacaagctccag
cgtcttgcctgccgttttggcgtactcatgaccagtatcgccgccggggggattattgcc
cgcccaatcgacatcgtgagcgggcaaaaatttctggcggatgaggaggagctggatttc
gtcctaccttcccgcttgcccgtctattggcaacgctgctggcgtagcggcaatcccggt
gatagcgtattgggaaagggatggagcctgttctgggaaacgacactgacctgctatcag
gacggtctggtctggcgcgccccgtcaggcgatctgatttcctttccttttgttcccgtc
ggccagcgaagctactgtccggcagaaaagcgctggctggagcaccatcaggatgaaagc
tggtcggtttatgggccggacggcgaagtatggtcttacaccgctttgtctccacagggg
aaagcggttctggcacgcattgccgaaccgtgtggtcatgacattctctttttctggaac
gatgatgacacgcttcaggcgctaacggatagcgccggacggcacctcacctgccggtat
cgtgacgggcgactggacagtgtctggctggatgaatcgacctgtctggtgcactatacc
tacaatgcgcaaaggcagttgattaccgtcaccgggcggggcggtagcgtgcgccgtcgt
tttacttggcacgatgacgggctgatggccagccatgaagaggcgagcggcctactcagc
gaatatcagtggcaggagattgccgatttaccgcgtgtggtggcctaccgcaacagcgcg
ggtgagcagcttacgctggagtatgatttcgccggacaacggcgaaccgcccgccgagag
gatggtctcatcgcgcagtggttacttgacgacgaaggtcacgtcactcactttaccgat
tacgacggccgtgagaccactctgagttatgccgatggcgaactgtgtgacgtcatcatg
cccggtggggcgagccgcaaaacgacctgggacgattatggtcgtttactcagcgagacc
gatccgctgggtcgggaaacttgctaccagtggtatcggctgacgggtcacattacgctg
gtcacgtatcccgacggcagccgcgagcaaatgcagtatgacgacctcaatcgtctggtt
gaggaaattgacgcacggggtaactcaactcgctaccagtaccccacggcacaggaaagt
ttgccggacagcatcaccgacgcactgggcggcaccgtcacgctggtctggaaccgacag
gggctgcttacggcacgtaccgactgttccgggcagtgcagcacctttgagtatgaccat
gacgggcagttgctggcatctgttgatgccgaaggtcacaccacccgccgggaatgggat
gcctgcgggcacctgacaagcgttatctacccggatggtcgccgggaaacactgcgctgg
aatgcccggggtcagttgcaggcctggcgtgacgcacagaacagcgaagtccgctggcac
tataacgtcctcggccagcccgtcagtgtaacggaccgtcttcgccggacaacgcgctgg
cactatgacgctcgcgggttgctgttacggctggagaacggcaacggcgcagcgtaccag
tttggctatgatgccgtcggccgactggttaacgagcagcgcgtggatggcgtcgagctg
actttccactacgacgccgccggtcacctgtgccagcggtcgcagcgcggtcatgccgcg
aatgacgaagctatctcacacatttatcagcacgatgcggccgggcaactggtgcgtcgt
gaacatgcccacgccgtgttccactaccagcacaacaacagagggcaactgctttccctg
aagcgtgaaccaaccggggaaggcctcgcgctgggtctcaccgccgatgaggtcaggctg
acctatgacgcagcgggcgacctgtcaggcgaacacggcagtgaaggcgacatcggctat
acccgggatgcactgggcaacgtgagtgccctgtcgctaccggatggtgacacgctgcgc
tggttgcgctacggctccggccacgtcagcgcggtaaaattcaaccatcaggtggtcagc
gagtttacccgtgaccggttgcaccgggaaatcagccgtactcagggccgccgcacgcag
caacgggcgtatgacagcctcggtcgcctgacctcgcagcgcagcggtctctgggatgtc
gcggagccggagcagcaacttctctcgcgggcgttacgctacacggcttccggcgaactc
gcttcagtcagggacagcctgcggggtgacgtgcagtatgattacgatgcagaaggtcgc
ctgctgaaacggattgacgtgcactggcaggtgcatcatcgggcatatggctatgatgcg
gctgacaatctgcaggatagcgcttattcaccgtctgcccgcccactctccgacaaccgc
ctgctgaactggcgtcatctgtggaaccagtatgacggccagggcaacctgatacggcgg
cgtgaaggcacaacggagcagttttaccagtatgatgcggacaaccgtctggttgaagcc
cggggccgggggccacagggcgagtttgtggcccgctatggctatgatgcgctgggcaga
cgcacccgtaaaacggtcacctggggtgacagcgggaaacaggaagagacgcgtttcctg
tgggaaggttttcggctgttgcaggccagacaggctgaccggacagaaacctacctttat
gacccgactatctggtggtcgccgttagcacgtatcacacagcaaccgggcgcgcctgac
ggtgatatccgctggttcaataccgagctgaacggcgcgccgctggagatgacggatgcg
gaaggtgcggtccgctggagtggagattacggcagcttcggtgccatcaatggacagacg
caggacagtgaaggactgcgccacggcaagccggtagaatcccagtcgctacgctatgcc
ggacaatacgcggatgaggaaacggggttacactacaacctgttccgctattacgacccc
accgtaggccgcttcacgacacaggacccgataggcctggcgggagggctgaatctttat
gcttatgcgccgaatccgctggggtgggtggatccgctggggttggccaaaatattaacc
gatggtgttgtctatcgtatgggaagtggaaccgactcaaatttgacccctcgaccagga
aaagatacaacgacaggactatctacaactatcgagaaaccttctaatggtaaatatcaa
actcttgatgtgaaaacgctaaatgatggcggattagatgtagttaaagatggtaaaaat
catgcttctgtcaggccaagtaatgatccagatatgtctagattgagagaatgggctgat
accagaggaaccgagaaatcgtcttcttatacaaagactgtaaagaaatcatgtggataa
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