Pectobacterium parmentieri RNS 08-42-1A: A8F97_19505
Help
Entry
A8F97_19505 CDS
T04513
Name
(GenBank) DNA-formamidopyrimidine glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
ppar
Pectobacterium parmentieri RNS 08-42-1A
Pathway
ppar03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ppar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
A8F97_19505
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppar03400
]
A8F97_19505
Enzymes [BR:
ppar01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
A8F97_19505
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
A8F97_19505
DNA repair and recombination proteins [BR:
ppar03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
A8F97_19505
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
Motif
Other DBs
NCBI-ProteinID:
AOR61057
UniProt:
A0A8B3FDT2
LinkDB
All DBs
Position
4308329..4309138
Genome browser
AA seq
269 aa
AA seq
DB search
MPELPEVETSRRGISPYLVGHTILYAEVRNSRLRWPVSAEILSLSDEPVLSVRRRAKYLL
IELTRGWIIVHLGMSGSLRVLPEYTEPEKHDHVDLVMDSGKVLRYTDPRRFGAWLWTDNL
ETCSVLAHLGPEPLEAEFSSDYLYQASRNKKTAIKQWIMDNKVVVGVGNIYASESLFAAG
IHPDRAAGSLNESDATVLVRVIKQVLQLSIEQGGTTLRDFLQSDGKPGYFAQELRVYGRS
GEPCRTCGTPIETAKHGQRSTFFCRCCQH
NT seq
810 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaattacctgaggttgaaaccagtcgccggggaatttcaccctatctcgtcggc
cataccatcctttatgcagaagtgaggaattcgcgcctgcgctggccggtatcggctgaa
attctttcactaagcgatgagcctgtgctaagcgtgcgtcgacgggcaaaatacctgctg
attgagctcactcgtggctggattatcgtgcatcttggtatgtctggcagcctgcgggtg
ttgccggaatataccgaacctgaaaagcacgatcatgttgatttggtgatggacagcggt
aaagtgctgcgttacaccgatccccgacgttttggtgcctggctgtggacggataatcta
gaaacctgctcggtattggcacatctggggccggagccattagaggcggaattctcctcg
gattatctctatcaggcttcacgaaataaaaaaacggcgatcaaacagtggattatggat
aacaaagtggtggttggcgtaggtaatatttacgcaagcgaatcgttgtttgctgctggt
atccaccctgacagagcggccggatcgttaaatgaaagcgatgcaacggtattggttcgc
gtgattaaacaggtgctacagctttcgattgagcagggtggcacgacgctgcgtgacttt
ttgcaatcagatggtaagcccggttatttcgcgcaggagctacgagtctatggccgcagc
ggcgaaccttgccggacatgtgggacaccaatagaaaccgcgaaacatgggcagcgtagc
acttttttttgtcgctgttgtcagcattaa
DBGET
integrated database retrieval system
