Pectobacterium parmentieri RNS 08-42-1A: A8F97_20690
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Entry
A8F97_20690 CDS
T04513
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
ppar
Pectobacterium parmentieri RNS 08-42-1A
Pathway
ppar03420
Nucleotide excision repair
ppar03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ppar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
A8F97_20690
03430 Mismatch repair
A8F97_20690
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppar03400
]
A8F97_20690
Enzymes [BR:
ppar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
A8F97_20690
DNA repair and recombination proteins [BR:
ppar03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
A8F97_20690
MMR (mismatch excision repair)
Other MMR factors
A8F97_20690
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
AAA_30
Viral_helicase1
AAA_22
PhoH
Reg_prop
Motif
Other DBs
NCBI-ProteinID:
AOR61274
UniProt:
A0A0H3IBB0
LinkDB
All DBs
Position
4553221..4555383
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AA seq
720 aa
AA seq
DB search
MDVSDLLDGLNDKQRAAVAAPRSNLLVLAGAGSGKTRVLVHRIAWLLSVENCSPYSIMAV
TFTNKAAAEMRHRINHLIGTSQGGMWIGTFHGLAHRLLRAHHMDANLPQDFQILDSDDQL
RLLKRLIRALNLDEKQWPPRQAMWFINGKKDEGLRPQHIESYGNPIEQTWQRVYQAYQEA
CDRAGLVDFAELLLRAHELWLNKPHVLNHYRERFTNILVDEFQDTNRIQYAWIHMLAGDS
AKVMIVGDDDQSIYGWRGAQVENIQLFLKDFAGAETIRLEQNYRSTSNILKAANALIAHN
GGRLGKNLWTDGVEGEPISLYCAFNELDEARYVVNRIKAWQENGGALKDNAILYRSNAQS
RVLEEALLQQSMPYRIYGGMRFFERQEIKDSLSYLRLIANRNDDAAFERVVNTPTRGIGD
RTLDVVRQTARDRQLTLWQATRALLQEKVLAGRAAASLQRFIELIDALAYETSELPLHVQ
TDRAIKDSGLWSMYEQEKGEKGQARVENLEELVTATRQFSYQEEDQDLMPLQAFLSHAAL
EAGEGQADANQDAVQLMTLHSAKGLEFPQVFIVGMEEGMFPSQMSLDEGGRLEEERRLAY
VGVTRAMEKLTITYAESRRLYGKEAYHRPSRFVGELPEECVEEVRLRASVSRPVNHQRLG
TPITQNDSGYKLGQRVRHAKFGEGTIVNLEGSGDHARLQVAFQGQGIKWLVAAYARLETV
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atggacgtttctgatctgctcgatggcctcaacgacaaacagcgtgccgcggtagccgcg
ccgcgcagcaatttattggtgctggcgggggcaggcagcggcaagactcgggtactggtt
catcgcattgcctggcttttgtctgttgagaactgttcgccgtactccatcatggcggtg
acgtttaccaacaaagccgcggcagagatgcgtcatcgtatcaatcacttgattggcacc
agtcagggtggcatgtggattggcaccttccacggattggcacaccgtctgctgcgtgca
caccatatggatgccaacctgccgcaggatttccagattctggacagtgacgatcagttg
cgcctgctgaaacggctgattcgggcgctgaatctggacgagaaacagtggccgccgcgt
caggcgatgtggttcatcaacggtaaaaaagatgaaggtttacgtccgcagcacattgaa
agctacggtaaccctatcgagcaaacgtggcagcgtgtatatcaggcctatcaggaagca
tgcgatcgcgccgggctggtggatttcgccgaactgctgctgcgtgcgcatgaactgtgg
ctgaataagccgcatgtgctgaaccactatcgtgagcgttttaccaatattctggtggac
gaatttcaggatactaaccgtattcagtacgcctggatccacatgctggcgggcgatagc
gccaaggtcatgatcgttggggatgacgatcagtcaatttacggctggcgtggtgcacag
gtcgaaaatattcaactgttcctgaaagattttgctggtgcagaaacgatccgcctggag
cagaactatcgttcgaccagcaatatcctgaaagcggcgaatgccctgattgcccacaac
ggcgggcggcttggtaagaacctctggacggacggtgttgagggcgagcccatttcactt
tactgcgcgttcaatgaactggatgaggcacgttacgtcgtcaaccgaattaaagcctgg
caggaaaatggtggtgcgctgaaagataacgctattctttaccgtagcaacgcccagtca
cgtgtgctggaagaggcgctgttacagcagagtatgccgtaccgcatctacggaggaatg
cgcttctttgagcgtcaggaaatcaaagattcgctgtcttatctgcgcctgatcgccaat
cgtaacgatgatgcggcgttcgagcgcgtggtgaatacgccgacgcgcggtattggcgat
cgcacgctggatgtcgtgcgtcagacggcgcgcgatcgccaactgacgctgtggcaagcc
acgcgggcgctgttgcaggagaaggtgctggccgggcgtgcggcggcatcgctgcaacgc
tttatcgaattgatcgatgcgctggcctatgaaacctctgaactgccgctgcatgtgcag
accgaccgggcgattaaagattctggcctgtggagcatgtacgaacaggaaaaaggcgag
aaagggcaggcgcgggtagaaaacctggaggaattggtgacggcgacgcgtcagttcagc
tatcaggaagaagatcaggatctgatgccgcttcaggcgttcctgtcgcatgctgcactg
gaagcgggtgaaggtcaggctgatgctaatcaggacgccgtgcagcttatgacgctgcac
tcggcgaaagggttggagttcccacaggtatttatcgtcggaatggaagaaggcatgttc
cctagccagatgtcgctggatgaaggtgggcgtctggaagaagagcgtcgtctggcttat
gtcggcgtcacgcgtgcgatggagaaactgacaataacctacgccgagtcccgtcggtta
tacggtaaagaagcctatcaccgaccgtcacgatttgtcggtgaactgcctgaagagtgt
gttgaagaggtgcgattacgcgccagcgtctctcgcccggttaaccaccagcgtcttggc
acaccgataacgcaaaatgacagcggctacaagctggggcagcgggttcgccatgcgaaa
ttcggcgaaggcaccatcgtgaatctggaaggcagcggcgatcacgcccgtcttcaggtc
gcgtttcaggggcagggtattaaatggctagtcgccgcctacgccagactggaaacggtg
tga
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