Pectobacterium parmentieri RNS 08-42-1A: A8F97_20730
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Entry
A8F97_20730 CDS
T04513
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ppar
Pectobacterium parmentieri RNS 08-42-1A
Pathway
ppar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A8F97_20730
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppar03019
]
A8F97_20730
03400 DNA repair and recombination proteins [BR:
ppar03400
]
A8F97_20730
Enzymes [BR:
ppar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
A8F97_20730
Messenger RNA biogenesis [BR:
ppar03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
A8F97_20730
DNA repair and recombination proteins [BR:
ppar03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
A8F97_20730
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
zf-CXXC
Helicase_Sgs1
Motif
Other DBs
NCBI-ProteinID:
AOR61282
UniProt:
A0A0H3IE71
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All DBs
Position
4561893..4563719
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AA seq
608 aa
AA seq
DB search
MSTAEVLNKEALAVQVLRDTFGYQQFRPGQQEIISATLSGQDCLVIMPTGGGKSLCYQIP
ALVMDGLTLVVSPLISLMKDQVDQLQAYGVSAACLNSTQTREQQLEVMAGCRTGQIKLLY
IAPERLTTDSFLDHLAHWQISLIAVDEAHCISQWGHDFRPEYRALGQIKQRFPHLPFIAL
TATADETTRNDIVRLLDLQSPLIQISSFDRPNIRYTLVEKFKPLDQLWMFVQGQRGKSGI
IYCNSRSRVEDISARLQARGLSAGAYHAGLDNERRAQVQEAFLRDDLQVVVATVAFGMGI
NKPNVRFVVHFDIPRNIESYYQETGRAGRDGLAAEAALFYDPADMAWLRRCLEEKPAGPQ
LDIERHKLNAMGAFAEAQTCRRLVLLNYFGEGRQEACGNCDICLDPPKRYDGLVEAQKAL
SCVYRVGQRFGLGYIVEVLRGANNQRIRDFGHDKLPVYGIGKDKSQEHWVSVLRQLIHLG
LLNQNITMHSAVQLTESARPVLRGEMPLQLAVPRVINLKPRANQKSYGGNYDRKLFAKLR
KLRKSIADEDNIPPYVVFSDATLLEMAEMMPITAGELLNINGVGHRKLERFGAPFMNMIR
DHVDNDDE
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
gtgtctacggcggaagtattgaataaggaagcgctggcggttcaggttctacgggacacg
ttcggctaccagcaattccgaccgggtcagcaggaaattatcagcgcgacgctcagtggg
caggactgtctggtcattatgccgacaggcggcggtaaatcgctatgctaccagatcccc
gcgctggtgatggacgggctgacgctggtggtgtctccgctgatttcgttgatgaaagat
caggtcgatcagcttcaggcctacggtgtttcggccgcttgtctcaattcgacgcagacg
cgcgaacagcagcttgaggtaatggctggctgtcgtaccggccagatcaaactgctttat
atcgcgccggaacgtctgacaacggacagtttcctcgatcatctcgcccactggcagatt
tcactgatcgcggtggatgaagcgcactgcatttcccaatggggacacgatttccgtcct
gaataccgggcgctggggcagattaaacagcgttttccccaccttccttttattgcactg
acggccaccgccgatgagaccacacggaacgatattgttcgcctgttggatcttcagtcc
ccgctgattcagatcagcagttttgaccgcccaaatattcgctacacgctggtggagaaa
ttcaaaccgctcgaccagctctggatgttcgtgcaggggcagcgggggaaaagtggcatt
atctactgtaatagccgttcccgcgtggaagacatcagcgcacgtttgcaggctcgtggg
ctgagcgcaggggcgtatcacgccgggttggacaatgaacggcgtgctcaagtgcaggaa
gcgttcctgcgtgacgatcttcaagtggtggtcgcaaccgttgcatttggtatgggtatc
aacaagcctaacgtgcggttcgtggtgcattttgatattccgcgcaacatcgaatcctac
tatcaggaaacggggcgtgccgggcgtgatggcctcgctgccgaagctgcactgttctac
gatccggcagatatggcatggctgcgtcgctgtctggaagagaaacctgccgggccgcag
ttggatattgaacgtcataagctcaatgcgatgggcgcgtttgccgaggcgcagacctgc
cgtcgtctggtgttactgaactatttcggtgagggacgccaagaggcctgcggaaactgc
gatatttgtctcgatccgccgaagcgttacgacgggctggttgaggcgcaaaaggcactt
tcttgcgtataccgagtcgggcagcgttttggtctggggtatatcgtcgaggtattacgc
ggtgcgaataaccagcgtattcgtgatttcggtcatgacaaactgccggtctacggtatt
ggtaaggataaatcgcaggagcattgggtcagcgtgctgcgccagttgattcatctgggt
ttgctgaaccagaacattacgatgcactccgccgtacagcttaccgaatctgcgcgtccg
gtattgcggggagaaatgccgttgcaactggccgtgccgcgtgtgattaacctgaaaccc
cgtgctaatcaaaaatcttacggcggaaattacgaccgtaagctgtttgccaaattgcgt
aaattgcgcaagtccattgcggacgaagacaatattccaccttacgtggtgttcagcgat
gccacgctgctggagatggcggaaatgatgccgatcacggcgggtgagttgctgaatatc
aacggggtcggccaccgcaaacttgaacgattcggtgcgcctttcatgaacatgatccgc
gatcatgtcgataatgatgatgagtga
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