Pectobacterium parvum: LOZ86_02465
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Entry
LOZ86_02465 CDS
T07916
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ppav
Pectobacterium parvum
Pathway
ppav03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppav00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LOZ86_02465 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppav03019
]
LOZ86_02465 (recQ)
03400 DNA repair and recombination proteins [BR:
ppav03400
]
LOZ86_02465 (recQ)
Enzymes [BR:
ppav01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LOZ86_02465 (recQ)
Messenger RNA biogenesis [BR:
ppav03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LOZ86_02465 (recQ)
DNA repair and recombination proteins [BR:
ppav03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LOZ86_02465 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
zf-CXXC
Helicase_Sgs1
Motif
Other DBs
NCBI-ProteinID:
UFK39781
LinkDB
All DBs
Position
553210..555039
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AA seq
609 aa
AA seq
DB search
MSTAEVLNKEALAVQVLRDTFGYQQFRPGQQEIISATLSGQDCLVIMPTGGGKSLCYQIP
ALVMDGLTLVVSPLISLMKDQVDQLQAYGVSAACLNSTQTREQQLEVMAGCRTGQIKLLY
IAPERLTTDSFLDHLAHWQISLIAVDEAHCISQWGHDFRPEYRALGQIKQRFPHLPFIAL
TATADETTRNDIVRLLDLQSPLIQISSFDRPNIRYTLVEKFKPLDQLWMFVQAQRGKSGI
IYCNSRSRVEDISARLQARGLSAGAYHAGLDNERRAQVQEAFLRDDLQVVVATVAFGMGI
NKPNVRFVVHFDIPRNIESYYQETGRAGRDGLAAEAALFYDPADMAWLRRCLEEKQAGPQ
LDIERHKLNAMGAFAEAQTCRRLVLLNYFGEGRQESCGNCDICLDPPKRYDGLVEAQKAL
SCVYRVGQRFGLGYIVEVLRGANNQRIRDFGHDKLPVYGIGKDKSQEHWVSVLRQLIHLG
LLNQNITMHSAVQLTESARPVLRGEMPLQLAVPRVINLKPRANQKSYGGNYDRKLFAKLR
KLRKSIADEDNIPPYVVFSDATLLEMAEMMPITAGELLNINGVGHRKLERFGAPFMNMIR
DHVDNNDDE
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
gtgtctacggcggaagtattgaataaggaagcgctggcggttcaggttctgcgggacacg
ttcggctaccagcaattccgaccgggtcagcaggaaattatcagcgcgacgctcagtggg
caggactgtctggttatcatgccgacaggcggcggcaaatcgctgtgctatcaaatcccc
gcgctggtgatggacgggctgacgctggtggtgtccccgttgatttcactgatgaaagat
caggtcgatcagcttcaggcctacggtgtctctgccgcttgcctgaattcgacgcagacg
cgcgagcagcagcttgaggtgatggccggttgtcgtactggtcaaatcaagctgctttat
attgcgccggaacgtctgacgacggacagcttcctcgatcatcttgcccactggcaaatt
tccctgatcgcggtggatgaagcgcactgcatttcccaatgggggcacgacttccggcct
gaataccgggcgctggggcagattaaacagcgtttccctcatcttccttttattgcgctg
accgcgaccgccgacgagaccacgcggaacgatatcgttcgcctgttggatctccagtcg
ccgctgattcagatcagcagctttgaccgtccgaatattcgctacacgctggtggagaag
ttcaaaccgctcgaccagctctggatgttcgtgcaggcgcagcgtggaaaaagcggcatc
atctactgcaatagccgttcccgcgtggaggacattagcgcgcgtttgcaggcgcgtggg
ctgagcgcaggggcttatcacgctggattggataacgaacggcgtgcacaagtgcaggaa
gcgttcctgcgtgacgatcttcaggtggtggtcgcgaccgttgcatttggtatgggcatc
aacaagcctaacgtgcggttcgtggtgcattttgatattccgcgcaacatcgagtcctac
tatcaggaaacggggcgagctgggcgtgatggcctcgctgctgaagccgcgctgttctac
gatccggcggatatggcgtggctgcgccgctgtctggaagaaaaacaggctggcccgcag
ttagatatcgagcgtcataagctcaatgcgatgggcgcgtttgccgaagcgcaaacctgc
cgccgtctggtgctgctgaactatttcggtgaaggacgccaagagtcctgcggcaactgc
gatatttgtctcgatccgccgaagcgctatgacgggctggtagaagcgcaaaaggcgctc
tcctgcgtataccgcgttgggcagcgctttggtttaggctatatcgtcgaggtgctgcgc
ggagcgaataatcagcgtatccgtgacttcggccatgacaaactgccggtttacggtatt
ggtaaagataaatcgcaggagcattgggtcagcgtgctgcgccagttgattcatctgggc
ttgctgaaccagaacatcacaatgcattccgccgtacagcttaccgaatctgcgcgccca
gtgttgcggggagagatgccgctacagctggccgtgccgcgtgtgattaacctgaaaccg
cgcgccaatcaaaaatcttacggtggaaattacgaccgcaagctgtttgccaaattgcgc
aaactgcgtaaatccatcgcggatgaagacaatattccgccttacgtggtgttcagcgat
gccacgctgctggagatggctgaaatgatgccgatcactgcgggtgagctgctgaatatc
aacggggttggacaccgtaaactcgaacgtttcggtgcgcctttcatgaacatgattcgc
gatcatgtcgataataatgatgacgagtga
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