Pectobacterium parvum: LOZ86_03025
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Entry
LOZ86_03025 CDS
T07916
Name
(GenBank) polysaccharide lyase
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
ppav
Pectobacterium parvum
Pathway
ppav00040
Pentose and glucuronate interconversions
ppav01100
Metabolic pathways
ppav02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
ppav00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
LOZ86_03025
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
LOZ86_03025
Enzymes [BR:
ppav01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
LOZ86_03025
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GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-ProteinID:
UFK39883
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Position
complement(690748..691872)
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AA seq
374 aa
AA seq
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MKYLLPSAAAGLLLLAAQPTMAANTGGYATTDGGDVAGAVKKTARSMQDIIDIIEEAKKD
ANGKKVKGGAYPLVITYNGNEDALIKAAEANICGQWSKDARGVEIKEFTKGITILGTNGS
SANFGIWLVKSSDIVIRNMRFGYMPGGAQDGDAIRIDNTPNVWIDHNEIFAKNFECAGTK
DGDTTFESAIDIKKASTNVTISYNYIHGIKKVGLSGFSSSDTGRDLTYHHNIYDDVNARL
PLQRGGQVHAYNNLYTGITSSGLNVRQKGIALIERNWFENAKNPVTSRYDGSNFGTWELR
NNNVMSPADFAKYNITWDKDSKPYVNAEDWKSTGTFASVPYSYSPVSPQCVKDKLANYAG
VNKNLAVLTAANCN
NT seq
1125 nt
NT seq
+upstream
nt +downstream
nt
atgaaatacctactgccttctgcagccgctgggctgttattgcttgcggcccaaccaacg
atggcggcaaatacggggggttatgccaccactgacggtggtgacgttgccggtgccgtg
aaaaaaacagcgcgctccatgcaagatattattgatatcatcgaagaagcaaaaaaggac
gcaaacggtaagaaagtcaaaggcggcgcttacccgctcgtcatcacctataacggtaat
gaagacgcgctgatcaaagccgctgaggccaacatctgcggccagtggagtaaggatgcc
cgaggtgtagaaatcaaagagttcaccaaagggattaccatccttggaactaacggatcg
tccgccaacttcgggatctggctggtaaaatcatccgatatcgtcatccgtaatatgcgc
tttggttacatgccgggcggcgcgcaggatggtgatgccattcgtatcgataacacgccg
aacgtctggattgaccacaacgagatcttcgcgaaaaactttgaatgcgcaggtacaaaa
gacggtgacaccacattcgaatccgcgattgatattaagaaagcctcgaccaatgtgacc
atttcgtacaactacattcatggcatcaaaaaagtggggctgagcggcttcagcagcagc
gatacgggccgtgacctgacttaccatcacaatatttacgacgacgttaacgctcgcctc
ccactgcaacgtggcggccaggttcacgcgtacaacaacctgtataccggcatcaccagt
tctggcctgaacgtgcgtcagaaagggattgcactgatcgaacgtaactggttcgagaat
gcgaaaaacccagtgacctcacgttatgacggttccaacttcggtacctgggaactgcgt
aataacaacgtcatgagcccagccgacttcgctaaatacaacatcacctgggataaagat
tccaagccctacgtgaatgcggaagactggaaaagcaccggtacgttcgcttctgttcct
tacagctactctccagtttctccacagtgcgtgaaggacaaactggcgaactatgctggc
gtgaacaaaaaccttgccgtgctgacagcagcaaattgcaactag
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