Pectobacterium parvum: LOZ86_03880
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Entry
LOZ86_03880 CDS
T07916
Symbol
truB
Name
(GenBank) tRNA pseudouridine(55) synthase TruB
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
ppav
Pectobacterium parvum
Brite
KEGG Orthology (KO) [BR:
ppav00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ppav03016
]
LOZ86_03880 (truB)
Enzymes [BR:
ppav01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
LOZ86_03880 (truB)
Transfer RNA biogenesis [BR:
ppav03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
LOZ86_03880 (truB)
Prokaryotic type
LOZ86_03880 (truB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB-C_2
TruB_C_2
Pus10_C
Motif
Other DBs
NCBI-ProteinID:
UFK40027
LinkDB
All DBs
Position
855768..856712
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AA seq
314 aa
AA seq
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MSRPRRRGRDVHGVLLLDKPQGVSSNDVLQKVKRIFNANRAGHTGALDPLATGMLPICLG
EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGNVIEERAIGFSATDLDQALEGFRGTTQ
QVPSMYSALKYQGRKLYEYARQGLTVPREAREITVYELQFIRWEGDELELEIHCSKGTYI
RTIIDDLGEKLGCGAHVIYLRRLQVATYPTERMVTLEQLAALAEQAQTQEDPLSLSLDPL
LMPMESPVIDFPEVNLTPVVAGYLKLGQAVQAANTPLDGMVRITEGDEHKFIGMGEIDSD
GRVAPRRLVVEFPV
NT seq
945 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgtcctcgccgccgtggccgtgatgtacacggcgtattgttattagataagcca
cagggcgtgtcgtctaatgatgttttgcagaaggtaaaacggatttttaacgcgaacaga
gcgggccatacgggggcgttggatccattagcaaccggtatgctgccgatttgtcttggg
gaagcgacgaagttttcccagtatttgctggattctgataagcgctaccgtgttattgct
cgccttgggcaacggaccgacacctctgatgccgatggtaacgtgattgaagagcgggcg
attggtttttctgctacggatttggatcaggcgctggaaggctttcgtggcaccacgcag
caagtgccgtccatgtactcggcgctgaaataccaagggcgcaagctgtatgagtatgcc
cgtcaggggctgacggttccacgtgaagcacgtgaaatcaccgtttacgaactgcagttc
attcgctgggaaggtgatgaactggagctagagattcactgctcgaaagggacgtacatc
cgtaccatcattgacgatctgggcgaaaagctgggctgtggtgcacatgtgatttatctg
cgtcgtttgcaggttgctacgtatcctactgaaagaatggtgacgttggagcagttagcg
gctttggccgagcaggctcaaacacaagaagacccactttcgctgagtctcgatccgctg
ctcatgccgatggaaagcccagttattgattttcccgaagtgaatttgacgccggttgtt
gctggctatttgaaactggggcaagcggttcaggccgcgaatacgccattggacggcatg
gtgagaatcaccgaaggtgacgagcacaaatttattgggatgggtgaaatcgacagcgat
ggccgcgttgcgccgcgtcgtttggttgttgagtttccagtgtaa
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