Pectobacterium parvum: LOZ86_03900
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Entry
LOZ86_03900 CDS
T07916
Name
(GenBank) DEAD/DEAH family ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ppav
Pectobacterium parvum
Pathway
ppav03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppav00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LOZ86_03900
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppav03019
]
LOZ86_03900
03009 Ribosome biogenesis [BR:
ppav03009
]
LOZ86_03900
Enzymes [BR:
ppav01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LOZ86_03900
Messenger RNA biogenesis [BR:
ppav03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LOZ86_03900
Ribosome biogenesis [BR:
ppav03009
]
Prokaryotic type
rRNA helicases
LOZ86_03900
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
DeaD_C
CMS1
Cas3-like_C_2
AAA_22
DRTGG
Motif
Other DBs
NCBI-ProteinID:
UFK40031
LinkDB
All DBs
Position
860666..862597
Genome browser
AA seq
643 aa
AA seq
DB search
MTDLFTSFSDLGLSAPIINALTDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF
ALPLLNNLKPELKAPQMLVLAPTRELAVQVAEACNDFAKHMHGVNVVALYGGQRYDVQLR
ALRGGAQIVVGTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENIMAQIPAA
HQTALFSATMPEAIRRITRRFMKDPQEVRIQSSVTTRPDISQSYWTVQGMRKNEALVRFL
EAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILI
ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNV
ERTMKLTIPEVELPNAELLGQRRLAKFAAKVQQQLESSDLDMYRALLTKLQPQEELDVET
LAAALLKMAQGERPLILPPDPAFRPRREYRDRDESRSDSRGDRRREPRDARDSRDSREPR
DGDRPQRRERRDAGEMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHST
IELPKGMPGDLLSHFTRTRILNKPMNMQLLGDAVAQPERRGGGRPAGAGGERRDGAAPRR
SFGGGERREGNANGGERRERSFNRDSAAAAPRAPRRRPADAGQ
NT seq
1932 nt
NT seq
+upstream
nt +downstream
nt
atgactgatttatttacttctttttccgatttggggctgtctgctcctattattaatgcc
ctgaccgatctgggctatgaaaaaccgtcgccaattcaggctgaatgtattccccacctg
ctgaacggtcgcgatgtgctgggtatggcacagaccggcagtggtaaaactgcggctttt
gctctgccattactcaataatttaaagcctgagttaaaagcgccgcagatgttggtgttg
gctccaacccgcgaactggctgttcaggttgctgaagcctgtaatgattttgccaagcat
atgcatggcgttaacgtcgttgccctgtacggtggccagcgttatgacgtgcaactgcgc
gctttgcgtggtggagcacagatcgttgttggtacgccgggccgtctgttggatcacctg
aagcgtggtacgctggatctgtccaacctgagtggtttggtgctggacgaagccgatgaa
atgctgcgtatgggcttcatcgaagatgttgaaaacatcatggctcagatccctgccgcg
catcagactgcgctgttctctgcaaccatgccggaagcgattcgccgcattacgcgtcgt
ttcatgaaagatccgcaggaagttcgcattcaatcaagcgtgactacgcgtccagacatc
agccagagctactggactgtgcagggcatgcgtaaaaatgaagcgctggtacgtttcctc
gaagcggaagattttgatgcggcgattattttcgttcgtaccaaaaacgcgacgctggaa
gtggctgaagcactggagcgtagtggttacaacagtgctgcgttgaacggtgacatgaat
caggcgctgcgtgaacaaacgctggagcgtcttaaagatggtcgtctggatatcctgatt
gcaaccgacgttgcggcgcgtggtctggacgttgagcgtatcagcctggtcgtcaactac
gatatcccaatggattctgagtcttacgtccaccgtattggtcgtactggccgtgcaggt
cgtgccggtcgcgcactgctgtttgttgaaaaccgtgaacgccgcctgctgcgcaacgtt
gaacgcacaatgaagctgacgattcctgaagtggaattgccaaatgcagaattgctgggt
caacgccgtctggctaaatttgccgctaaagtacagcaacagctggaaagcagcgatctg
gatatgtaccgtgcgctgctgacgaaactgcaaccgcaggaagagttggatgttgaaaca
ctggctgctgcgctgctgaaaatggcgcaaggcgaacgtcctctgattctgccaccagat
ccggcattccgtccgcgtcgcgaataccgcgatcgtgatgagtctcgtagtgattcacgt
ggcgatcgtcgccgtgaacctcgcgatgctcgtgattcacgcgattcccgtgaaccccgt
gacggtgaccgtccacagcgtcgcgagcgtcgtgatgcgggtgagatgcaactgtaccgt
atcgaagtgggtcgtgatgacggcgttgaagttcgccacattgttggtgctatcgccaac
gaaggtgatatcagcagccgctacatcggtaacatcaagctgttcgcgtctcactcgacg
attgaactgccgaaaggtatgccgggcgacctgttatcacacttcacccgcacgcgtatt
ctgaacaaaccaatgaatatgcaattgctgggtgatgcagtcgcacagccagaacgtcgt
ggtggtggtcgtcctgcgggggcaggcggtgaacgtcgtgatggcgcagcgccacgccgc
tctttcggtggtggtgaacgccgtgaaggtaacgctaacggcggtgagcgtcgcgaacgt
tcttttaatcgtgattcagctgcagctgcaccgcgtgctccacgccgtcgtcctgctgac
gctggtcaataa
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