Pectobacterium parvum: LOZ86_03975
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Entry
LOZ86_03975 CDS
T07916
Name
(GenBank) sigma-70 family RNA polymerase sigma factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
ppav
Pectobacterium parvum
Pathway
ppav02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
ppav00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
LOZ86_03975
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppav03021
]
LOZ86_03975
Transcription machinery [BR:
ppav03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
LOZ86_03975
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_r4
HTH_23
Sigma70_ECF
GerE
HTH_28
Xre-like-HTH
HTH_11
NirdL-like_HTH
HTH_24
PCI
HTH_Tnp_ISL3
Motif
Other DBs
NCBI-ProteinID:
UFK40046
LinkDB
All DBs
Position
complement(880123..880665)
Genome browser
AA seq
180 aa
AA seq
DB search
MSSANIDTSADLHQLYCQHHGWLQGLLRKRLGNLCDAADLAQDVFLRLLLKPRQFDSHAG
ARAYLSVMAQGMCVDLWRKREIERVWLTSLAEQPEPVALSAEDSNIILEALYQVDAMLRA
LPEKVRAAFIMAQVQGLPYREIATALGVSERMVKKYMAQAMLHCVLLEAEIDADGQAVHS
NT seq
543 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcagccaatattgatacctcagcagatctgcatcagctctattgtcagcatcat
ggctggctgcaagggctattgcgcaaacggctggggaatctgtgtgatgcggccgatctg
gcgcaggatgtatttttacggctcttgctgaaaccgcgccagttcgacagccacgcaggc
gcgagggcttacctgagcgtgatggcgcaaggcatgtgcgtcgatctctggcgcaaacgg
gaaattgagcgcgtctggctcacctcattagccgaacagccggagccagttgccctgtcg
gcggaagacagcaatatcattctcgaagcgctgtatcaggtcgatgccatgctgcgggcg
ctgccagaaaaggtgcgcgccgcctttatcatggcgcaggttcagggattgccctatcgg
gaaattgctacggcgctgggcgtttccgaacgtatggtgaaaaaatacatggcgcaggcc
atgctgcactgtgtgctgctggaagcggagatagacgcggacggtcaggccgttcattca
tga
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integrated database retrieval system
