Pectobacterium parvum: LOZ86_04330
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Entry
LOZ86_04330 CDS
T07916
Name
(GenBank) rhamnogalacturonate lyase
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
ppav
Pectobacterium parvum
Brite
KEGG Orthology (KO) [BR:
ppav00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
LOZ86_04330
Enzymes [BR:
ppav01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
LOZ86_04330
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Gene cluster
GFIT
Motif
Pfam:
CBM-like
fn3_3
Rhamnogal_lyase
CarboxypepD_reg
RhgB_N
CarbopepD_reg_2
BPA_C
Motif
Other DBs
NCBI-ProteinID:
UFK40108
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Position
961800..963530
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AA seq
576 aa
AA seq
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MKRSVLLLVGAMLAPYGYSAQDNAVSLSVSGLNTVLDNGLLKVAFGEDGSAVSMVTGGKN
IVTNLSGAARDPSKMRSAYLDYYINDVHAKGVKDFVPERVEVLRNDRDMAHVVYIDDRDG
LLRLEYHLIMRRGVSGLYSYVVAENSGSQDVKVSELRNVYRFDPARLDHLYNGDRQGKPL
LYSQLEASPKVQDETWRLPDGSIYSKYDFAGYMRAAPFWGVFGNGVGAWLIHGNREYFSG
DALKQDLLVHQDAIILNYMTGSHFGTPDMVAPPGWKKFYGPWLLYINQGDTEKILADAQR
QALTEAVNWPYNWVNDSRYARDRTQVSGRVASQQPVTVVLSSSLDEPFDVQTRGYSYQAT
TDTQGNFAIPYVRPGNYHLAVYANSGTQPGILAEQTLSVSGDKQSLPVITLPKAESVVWA
IGQANRQASEFRFGNGARNTRWQHEVPANLTFDIGRSDYQHDWYYAQIKPGKWDIRFALQ
PEKKTYFLNIALAAASNSGMSEPTMPQLAITVNGSTLETLTYENDKAIYRGALQSGRYHI
ARIPVSSRFLKNGNNTITLQLKGGSVMYDVVTLSEE
NT seq
1731 nt
NT seq
+upstream
nt +downstream
nt
gtgaagcgatctgtcttgttgttggtgggggccatgctggcaccctatggctatagcgcg
caggataatgcggtgtcgttatccgtttctggtttgaataccgttctggataatggctta
ctaaaagtcgcgttcggggaggatggcagcgcggtaagcatggtgacgggaggcaaaaat
atcgtcactaacctgtccggcgcggcgcgcgacccaagcaaaatgcggagcgcttacctc
gattactatattaacgatgttcatgctaaaggcgtcaaagattttgtccccgagcgggta
gaggtgctgcgcaacgatcgagatatggcgcatgtggtctatatcgacgatcgggacggg
ctgttacggcttgaatatcacctgattatgcgtcgcggcgttagcgggctttatagctat
gtggtggccgagaatagcggaagtcaggacgttaaagtcagtgaattgcgtaacgtctat
cgcttcgatcccgcccggttagatcatctctacaacggcgatcgtcaaggtaaaccgcta
ctctacagccagcttgaagcgtcgccgaaggtgcaggatgaaacctggcgattgccggat
ggcagcatttattccaaatatgattttgccggttacatgcgtgccgcgcctttctggggc
gttttcggtaatggtgtgggcgcgtggctgattcatggcaatcgggagtatttctccggc
gatgcgctcaagcaggatctgctggtgcatcaggatgcgatcatcctgaactacatgacg
ggctcgcactttggcacgccggatatggtagccccgccgggctggaaaaaattctacggt
ccgtggctgctgtatatcaatcagggcgataccgaaaaaatattggcggatgctcagcgt
caggcgctgacggaagccgtcaactggccgtataactgggtcaacgattcccgctatgcg
cgcgatcgcacgcaggtgagcggacgcgttgccagccagcagccggtgaccgtcgtgctt
tcgtcatcactggatgaaccgttcgatgtgcaaacccgtggctattcgtatcaggcaacc
acggatactcaggggaattttgcaatcccctatgttcgcccgggcaattatcatctggcg
gtatacgccaacagcggtacgcagcctggaatattggcagaacaaacgctgtccgtttcc
ggtgataagcaatcgctgcctgtgataaccctaccgaaagccgaatcggttgtttgggct
attggacaggcaaatcggcaggctagtgaattccgttttggcaatggggcacgcaacacc
cgctggcagcatgaggttccggcaaacctgacgtttgatattggccgcagcgactatcag
cacgactggtattacgcgcagatcaaaccgggaaaatgggacatccgttttgccctgcaa
cctgagaaaaaaacctattttctgaatatcgcactggcggcagcgagcaacagcggcatg
agtgagccgaccatgccacagctggcgataacagtgaacggcagcacgttggagacgctg
acttacgaaaacgacaaagccatttatcgcggagcgctacagagtggtcgttatcacatt
gcccgcatccctgtgtcatcccgctttctgaaaaacggcaacaacacgatcacgctgcaa
ttaaaaggcggcagcgtgatgtatgacgtggtgacattaagcgaggaataa
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