Pectobacterium parvum: LOZ86_04600
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Entry
LOZ86_04600 CDS
T07916
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
ppav
Pectobacterium parvum
Pathway
ppav03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppav00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LOZ86_04600 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppav03019
]
LOZ86_04600 (rnr)
03016 Transfer RNA biogenesis [BR:
ppav03016
]
LOZ86_04600 (rnr)
Enzymes [BR:
ppav01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
LOZ86_04600 (rnr)
Messenger RNA biogenesis [BR:
ppav03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LOZ86_04600 (rnr)
Transfer RNA biogenesis [BR:
ppav03016
]
Prokaryotic type
tRNA degradation factors
LOZ86_04600 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
WHD_RNase_R
S1
Motif
Other DBs
NCBI-ProteinID:
UFK40158
LinkDB
All DBs
Position
1029680..1032136
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AA seq
818 aa
AA seq
DB search
MSQDPFLEREAEKYESPIPSREYILAHIAKRDTPISREELATDLQLTGEEALEALRRRLR
AMERDGQLIFTRRQCYALPEKLDLLRGTVIGHRDGFGFLRVEGRKDDLYLSAEEMKRTIH
GDVALAQPLGADRKGRREGRIVRVLEPRTGQIVGRYFVDAGVGFVVPDDSRLSFDILIPK
EEINGARMGFVVVVELTQRATRRTKAVGKIVEILGDNLGTGLAVDIALRTHDIPHTWPPK
VEEQVKDLSEEVPEAAKKGRVDLRKLPLVTIDGEDARDFDDAVHCEPKRGGGWRLWVAIA
DVSYYVRPNTPLDHEARARGTSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTVS
AQGKLSSYKFYEAVMSSHARLTYTKVWNILQGDAELREHYKPLVGGLEELHRMYKALEHA
REVRGGIAFETEEAKFIFNAERRIDRVEAVVRNDAHKLIEECMILANISAAKFVEKNEEP
ALFRVHDQPSEDHVLALRSVLGELGLTLKGGMKPQPKDYAELMNELADRPDREMLQTMLL
RSMKQAIYDPENRGHFGLALTSYGHFTSPIRRYPDLSLHRAIKYLLSDRHERWTSTGGWH
SDMNEMLQLGMHCSMTERRADEATRDVADWLKCDFMQDHVGEVFTGIIASVTGFGFFVRL
KDLFIDGLVHVSTLDNDYYRYDNIGQRLIGESRGQVYRLGDEVEIRVEAVHMDERNIDFA
LVSSTRKVRGEGKTARDRVKKPESREAKPSRRRRSASKPATNFEPDAAFRKEGDSNAKSD
KPKAKPKKNHDKAKKNAEKTRKIAAATKAKRAKKKSEE
NT seq
2457 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaagatccattcctggaacgagaagcagaaaaatacgaatcccccatccccagt
cgtgaatatattttggcgcacatcgccaagcgcgataccccgattagccgggaagaatta
gccaccgacctgcaattaaccggagaagaagcgctcgaagcgctgcgccgtcgcctgcgt
gcgatggagcgtgatggtcagcttatttttacccgccgccagtgctatgcgttgccggaa
aagctcgatctgctgcgcggcacggtcattggtcaccgcgatggttttggcttcctgcgt
gtggaaggccgtaaagacgatctttatctgtcggctgaagagatgaaacggacgattcac
ggcgatgttgcgttggcacagccgctgggtgcggatcgtaaaggacgccgtgaagggcgt
attgtacgcgtgctggaaccgcgtaccgggcaaattgtcggccgctattttgtcgatgcc
ggtgtcgggttcgtggtgccggatgacagccgcctgagcttcgatattctgatcccgaaa
gaagaaattaacggcgctcgtatgggcttcgtggtggtggttgagctgacgcaacgcgcc
acgcgccgcacgaaagcggtgggtaagatcgtcgagatcctcggtgacaatctgggcacc
gggctggcggtggatatcgctctgcgtacccatgatattccgcacacctggccgcctaaa
gtggaagagcaggtaaaggatctctccgaagaggtgccggaagccgcgaaaaaaggccgt
gtggatctgcgtaagctgccgctggtcacgattgacggcgaagatgctcgcgatttcgat
gatgcggtgcactgtgagccgaaacgcggcggtggctggcgcttatgggttgcgattgcg
gacgtgagctattacgttcggccgaatacgccactcgaccatgaagcacgggcgcgtggc
acctcggtatacttcccgtcgcaggtggtaccgatgctgccggaagtgctgtcgaacgga
ctctgctcgcttaacccgcaggtcgatcgcctgtgtatggtctgtgaaatgaccgtttcg
gcgcagggtaagctgtcgtcctataagttttatgaagcagtgatgagttcacatgcgcgc
ctgacctacaccaaagtgtggaatattctgcaaggcgacgccgaactgcgcgagcactac
aagccacttgtcggtgggttggaagagctgcaccgcatgtacaaggcgcttgagcacgcg
cgtgaagtgcgtggcggcatcgcgtttgaaacggaagaggcgaagttcattttcaacgct
gaacgccgtatcgatcgtgtggaagcggtggtgcgtaacgatgcgcacaaactgatcgaa
gagtgcatgattctggcgaatatctccgccgcgaaatttgtggagaaaaacgaagaacct
gcgctgttccgcgtgcacgatcagccgagtgaagaccatgtcttagctctgcgtagcgtg
ttgggcgaactggggctgacgctgaaaggcggaatgaagccacagccgaaagattacgca
gaattgatgaatgagttagctgaccgtcccgatcgggaaatgctgcaaacgatgctgctg
cgttcaatgaaacaggcgatttatgacccagagaaccgaggtcacttcggtctggcatta
acgtcttacggccatttcacgtcaccgattcgccgttatccagacctgtcgctgcaccgc
gctattaagtatctgctgagcgatcgtcatgagcgctggacgtcaacgggcggctggcat
agcgacatgaatgaaatgctgcaactgggcatgcattgctcgatgacggagcgccgtgcg
gatgaagctacgcgtgacgtcgcggactggctgaaatgcgactttatgcaggatcacgtg
ggtgaggtctttacggggattatcgccagcgtgaccggttttggcttcttcgtacgcctg
aaagatctgtttattgatgggctggtacacgtttccacgttggataatgactactaccgc
tacgacaatatcggacagcggctgatcggcgaatcgcgcgggcaggtttatcgcctgggt
gatgaagtcgaaattcgtgttgaagccgttcatatggatgagcgcaacattgatttcgcc
ttggtttccagcacgcgcaaagtgcgtggcgaagggaaaaccgcgcgcgaccgtgtgaag
aaaccggagtcgcgtgaggccaagccaagtcgacgtcgtcgcagtgccagcaaaccggcc
acaaattttgagccggatgccgccttccgcaaagaaggcgatagcaacgcgaaatcggat
aagccaaaagccaagccgaaaaagaaccacgacaaagcgaaaaagaacgcggaaaaaacg
cgtaaaatcgccgccgcgacgaaggctaaacgagcaaagaagaaatctgaggaataa
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