Pectobacterium parvum: LOZ86_05855
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Entry
LOZ86_05855 CDS
T07916
Symbol
thpR
Name
(GenBank) RNA 2',3'-cyclic phosphodiesterase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
ppav
Pectobacterium parvum
Brite
KEGG Orthology (KO) [BR:
ppav00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ppav03016
]
LOZ86_05855 (thpR)
Enzymes [BR:
ppav01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
LOZ86_05855 (thpR)
Transfer RNA biogenesis [BR:
ppav03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
LOZ86_05855 (thpR)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
Motif
Other DBs
NCBI-ProteinID:
UFK40383
LinkDB
All DBs
Position
complement(1309348..1309878)
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AA seq
176 aa
AA seq
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MSATRRLFFALSLPEATQQEIIRWRAEHFPLEAGRPVAAANLHLTLAFLGDVSEQKAQVL
QTLAGRIHQPAFSLTLNDAGHWPRPGVVWLGCRRAPRGLLQLAELLRSQAARNGCYQTAL
PFHPHITLLRGATRPVAIPPATFSWQVDMTHFSLYESLFNNGKTRYQQLESWSFIK
NT seq
531 nt
NT seq
+upstream
nt +downstream
nt
atgtcagccacccgccgcctgttttttgccttatcactgccggaagccacacagcaagag
attattcgctggcgcgccgaacacttccctctggaagcgggtcggccggtcgcggcggct
aatcttcatctgacgctggcgtttttaggcgatgttagcgagcaaaaagcgcaggttttg
cagacgctggcaggccgcatccaccagcccgccttttcccttacgctgaatgacgctggg
cactggccgcgtcccggtgtggtctggctgggctgccgtcgtgcaccgcgcgggctgcta
caattggcggaactgctgcgctctcaggccgcgcgcaacggctgctatcaaacggcattg
ccgtttcacccgcacattacgctattgcgcggcgcgactcgccccgtcgcaattcccccc
gccacctttagctggcaggtcgacatgacgcacttttcgctttacgaatcacttttcaac
aatggcaaaacccgctatcaacagttggaaagctggtcatttattaaatag
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