Pectobacterium parvum: LOZ86_05860
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Entry
LOZ86_05860 CDS
T07916
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
ppav
Pectobacterium parvum
Brite
KEGG Orthology (KO) [BR:
ppav00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppav03019
]
LOZ86_05860 (hrpB)
Enzymes [BR:
ppav01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
LOZ86_05860 (hrpB)
Messenger RNA biogenesis [BR:
ppav03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
LOZ86_05860 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
CON_HrpB
DEAD
Helicase_C
AAA_22
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
UFK40384
LinkDB
All DBs
Position
1309971..1312415
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AA seq
814 aa
AA seq
DB search
MILPPVSAVLDDVITALHNAPQVLLNAPTGAGKSTWLPLQLLQQGNLNGRIIMLEPRRLA
AKSVAWRLAQQLGEEPGKTIGYRMRSESCVSDATRLEVVTEGMLTRLLQQDAELQGVALI
ILDEFHERSVQADLALALLLDVQQGLREDLKLLIMSATLDNVRLAALLPEAVCVVSEGRS
YPVERCYAPLNSQERLEEGVARQVRRLLSEEAGSLLLFLPGVAEIRRVQALLENSVSSET
DLCPLYGALTLAEQQKAILPAEPGRRKVVLATNIAETSLTIEGIRLVMDSGLERVASFDV
KSGVTRLATQRISQASMVQRAGRAGRLSPGICWHLCSREQAERVAAQSEAEILNSDFSSI
WLDLLQWGCTDVTQLTWLDTPPAPALYSARQLLRQLGITDKQDRLTVEGRKIAALGCDAR
LATMLYAASLQGSGALATAGCLAAILEEPPRSGSINLADWLHHPLPHWLRRAKQLTRRLS
TASGRIDGSYADWLLAQAFPDRIARRRSQDGRYQLANGSGAMMSADEALSGTEWLLAPAL
LQNNQSADARILLALPLDIERLERQLPGLISEHNVVHWDEEKGTLRASQRDQIGSLTLRT
RPLNKPSDEALQQALLSWIREQGIDALNWDAAALQLRARLQCAHQWLPELDWPRVDEETL
LATLEIWLQPSLVGVRDLRALHQINLSDALLRLLDWSLRQRLDSALPTHYTAPGGSRLPI
AYYDDKPPVLSVRMQEMFGEQQSPLLAEGRVALVLELLSPAQRPLQITRDLAAFWQGTYR
EVQKEMKGRYPKHVWPDDPANTAPTRRTKKYQNH
NT seq
2445 nt
NT seq
+upstream
nt +downstream
nt
gtgattttaccgcccgtcagcgccgtgctggatgatgtgataacggcgctacataacgcg
cctcaggtgctgctcaatgccccaacgggtgcggggaaatcgacctggctgccgttgcag
ttgctgcaacagggcaacctgaacgggcgcatcatcatgctggagccacgccgtctggcg
gcaaagagcgtggcttggaggctggcgcagcagctaggtgaagagccggggaaaaccata
ggctatcgcatgcggtcggaaagctgcgtgagtgacgcaacgaggctggaagtcgtcacc
gaaggcatgctgacccgtttgctgcaacaggatgcggaactgcaaggtgtggcgctaatc
atccttgatgaatttcacgagcgcagcgtgcaggccgatttagcattggcgctgttgctc
gatgtgcaacaagggctgcgtgaagacttaaagttgctgattatgtccgcgacgctcgac
aatgtgcggctggcggcgctgttgccggaagccgtctgcgtggtttccgaaggccgtagc
tatccggtagagcggtgttatgcgccgttgaacagtcaggagcgtttggaagaaggcgtt
gcgcgacaggtgcgacgccttctcagcgaagaagcgggttcactgctgctgtttttgccc
ggcgtcgcggagattcgccgtgtgcaggcgctgctggaaaatagcgtgtcgagcgagaca
gatctttgtcctttatatggggcattgacgctggcggagcagcaaaaggcgattctgccc
gcggagccgggtcgtcgtaaggtggtgttagccaccaatattgcagaaaccagtctgacg
attgaaggcatccggctggtgatggatagcggccttgaacgcgtagccagctttgatgtg
aaaagcggcgtcactcgactggcgacgcagcgaatcagtcaggcatcgatggtgcagcgc
gccggacgtgccggacgtttaagccccggtatatgctggcatctgtgctctcgtgagcag
gcagaacgcgtggcggcgcaaagtgaagccgagatactgaatagcgatttcagcagtatc
tggctggatttattacagtggggctgcactgatgtgacgcagttaacctggctggatacc
ccgccagctcctgcgctttattccgcacgccagctgctgcgccagcttggtattaccgat
aaacaagatcggctgactgtcgagggtcggaaaatagccgcgttaggctgcgatgcccga
ctggcgacgatgctgtatgccgcgtcactgcaaggttcaggtgcattagccactgccgga
tgtctggccgcgatactcgaagagccaccacgcagcgggtcgatcaatctggctgactgg
ctgcatcacccattgccacactggctgcggcgggcaaaacagctaacgcgtcgtttatcg
acggcgtcagggcgcattgacggtagctacgccgactggctgctggcacaggctttcccc
gaccgcatcgcccggcggcgtagtcaggatggacgctaccagcttgctaacggcagcggt
gcgatgatgtcggctgatgaggcgttgtcaggtactgaatggcttctggcacctgcgcta
ttacaaaataaccagagtgccgacgcgcggattctattggcgttgccgctggatattgag
cggctggaacgacaactacccggattaataagtgaacataacgtggtgcactgggacgaa
gaaaagggtactctgcgcgccagccagcgcgaccagataggcagcctgactctgcgaacg
cgcccgctgaataagccttccgacgaggcattgcagcaggcgctgctatcttggattcgt
gagcaggggattgatgcattaaactgggacgctgcggcgttgcagttacgcgcccggcta
cagtgcgctcaccagtggttgcctgagcttgactggccgcgagtggatgaagaaacgctg
ctggcaacgctggaaatctggctacagccgtcacttgtcggtgtgcgtgatttacgggcg
ctgcaccagatcaatttgagcgatgcgctgctgcgattgctggactggtcgctgcgccag
cggctggatagcgcgctgcccacacactacacggcacccggcggcagtcgtttgcctatc
gcctattatgacgataagcctccagtgctgtcagtgcgaatgcaggaaatgttcggtgag
cagcagagcccgctgctggcagaagggcgtgtagcgctggtattggaacttttatcaccc
gcacaacgtccactacagattacgcgggatttagcggcattctggcaaggcacgtaccgc
gaggtgcaaaaagagatgaaggggcgttaccccaagcatgtctggccggacgatccggcg
aatacggctccgacgagacgtaccaagaaatatcagaatcactaa
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