Pectobacterium parvum: LOZ86_09180
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Entry
LOZ86_09180 CDS
T07916
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ppav
Pectobacterium parvum
Pathway
ppav03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ppav00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LOZ86_09180 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppav03400
]
LOZ86_09180 (mfd)
Enzymes [BR:
ppav01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LOZ86_09180 (mfd)
DNA repair and recombination proteins [BR:
ppav03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LOZ86_09180 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MFD_D3
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
UFK40977
LinkDB
All DBs
Position
complement(2031124..2034576)
Genome browser
AA seq
1150 aa
AA seq
DB search
MMPENYRYSLPPKAGEQRLLGQLTGAACAVECAEIIERHAGLVVLIAPDMQNALRLRDEI
QQFTDQHVTTLPDWETLPYDSFSPHQEIISTRLSTLYQLPNMTRGVLILPVNTLMQRICP
HSFLHGYALVLKKGQRLSRDKLRSQLEQAGYRSVDQVMEHGEYATRGALLDLFPMGSEEP
YRIDFFDDEIDSLRLFDVDTQRTLNEVPHINLLPAHEFPTDKSAIELFRSQWREQFEVRR
DAEHIYQQVSKGVWPAGIEYWQPLFFSEPLPSLFSYFPNNTLIVNTGNIEQSAERFWQDI
QQRFESRRVDPMRPLLPSDSLWLRVDGLFTELKAWPRVQLRTDTLPEKAANVNLAYLPLP
ELAIQHQQKSPLDALRRFIEQFEGQIIFSVESEGRRETLQELLARIKLNPTLINTLEQAQ
ERGTYLIIGASEHGFIDTLRQRALICESDLLGERVSRRRQDSRRTINTDTLIRNLAELRP
GQPVVHLEHGVGRYAGLTTLEAGGIKAEYLILTYAGEDKLYVPVSSLHLISRYAGGADEN
APLHKLGGDAWSRARQKAAERVRDVAAELLDIYAQRAAKSGFAFKHDKTQYQLFCESFPF
ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTT
LLAQQHFDNFRDRFANWPVKIEMISRFRSAREQTQVLKETQEGKVDILIGTHKLLQSDVH
WRDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATP
PARRLAVKTFVREYDNLVVREAILRETLRGGQVYYLYNDVENIEKATQRLAELVPEARIA
IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPSANTIIIERADHFGLAQLHQL
RGRVGRSHHQAYAYLLTPNPKAMSTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL
GDDQSGQMTSVGFSLYMELLESAVEALKAGREPSLEDLINSQTDVELRLPALLPDDFIPD
VNTRLSLYKRIASAKTTTELDELKVELIDRFGLLPDASRYLLQIAALRQQAQALGIRRIE
GNEKGGFIEFSEQNRVDPSHLIGLLQRDPGTYRLDGPTRLKFMKDLSDRPQRIEFIGSLL
GNMAQHTLAA
NT seq
3453 nt
NT seq
+upstream
nt +downstream
nt
atgatgcctgaaaattaccgttattcgctgccgcccaaagcgggtgagcagcgcctgctg
ggccagttaaccggcgctgcctgcgccgttgaatgtgcagaaatcattgaacgccacgcc
gggctagtggtgcttatcgcgccggatatgcaaaacgctctgcgattgcgtgatgaaatt
cagcaatttaccgaccagcacgtcaccaccctgcctgactgggaaacgctgccctacgat
agtttttctccgcatcaggaaattatttcgacccgcctttccacgctctatcaattgccc
aacatgacgcgcggcgttctgattctgccggtcaacacgctgatgcagcgcatttgtccg
cacagtttcctgcacggctatgcgctggtgttgaaaaaaggccagcgcctctcgcgcgat
aagctgcgttcgcaattagagcaggcgggctaccgcagcgtcgatcaggtcatggaacac
ggtgaatatgccacgcgcggcgcgctgctggacctgttcccgatggggagcgaagagccc
taccgtatcgatttctttgacgacgagatcgacagcctgcgtctgttcgatgtggatacg
cagcgcacgctgaatgaagtgccgcacattaatctgctgcccgcccacgagtttccgacc
gataaatccgccatcgaacttttccgcagccagtggcgcgagcagtttgaggtgcgacgc
gatgccgagcacatttatcagcaggtcagcaaaggcgtctggcccgccgggatcgaatac
tggcagccgttattcttcagtgagccactgccgtcgttgttcagctatttcccgaacaac
acgctgatcgtcaacacaggcaatatcgaacagagcgccgagcgtttctggcaggatatt
cagcagcgctttgaaagccgtcgtgtcgatcctatgcgtccgctgctgccgtcggattca
ctctggctgcgcgtagacggtctgttcacggagctgaaagcgtggccgcgcgtgcaatta
agaaccgatacgctgccggaaaaagccgccaacgtgaatctggcctatctgccgctgccg
gagctggcgattcagcatcagcagaaatccccgctggacgcgctacgccgttttatcgaa
cagttcgaaggccagattattttctccgtcgagagcgaaggccgacgtgaaacgcttcaa
gagctgctggcgcgtatcaaactgaatccgacactcattaacacgctggagcaggctcag
gagcgcggcacttacctgatcatcggtgccagcgaacacggttttatcgacacgctgcgt
cagcgtgcattgatctgcgaaagcgatctgctgggtgagcgcgtcagtcgccgccgtcag
gatagccgccgcacgatcaataccgatacgctgattcgcaatctggcggaactacggccg
gggcagcccgttgtccacctcgaacacggcgttggccgttatgctgggctaaccacgcta
gaagcaggcggcatcaaggccgaatacctgattttgacttatgcgggcgaagacaagctg
tacgttcctgtttcctcgctgcatttgatcagccgctacgcgggcggtgccgatgagaat
gcgccgctgcataaactgggtggcgatgcctggtcacgcgcgcggcaaaaagcggcagaa
agagtgcgcgatgtcgctgccgagctgctggatatttatgctcagcgtgcggcgaaaagc
ggctttgcgtttaagcatgacaaaacgcagtatcagcttttctgcgaaagtttccccttc
gaaaccacgcccgatcaggcgcaggccatcaacgccgtgctgagcgacatgtgccagccg
ctggcgatggatcgtctggtctgtggcgatgtcggctttgggaaaaccgaagtggcgatg
cgcgccgcgtttttggcagttgaaaaccataaacaggttgccgttctggtgccaacaacg
ctgttggcacagcagcactttgacaactttcgcgatcgctttgccaactggccggtgaag
attgaaatgatctcccgcttccgcagcgcgcgtgaacaaactcaggtgctaaaggaaacg
caggaaggcaaagtcgatattctgattggcacccataagctgttacagagcgacgtacac
tggcgtgatttagggctgctaattgtggacgaagagcatcgcttcggcgtgcggcacaaa
gagcggatcaaagcgatgcgggcggatgtcgatatcctgacgctgaccgctacgccgatt
ccgcgtacgctcaacatggccatgagtggaatgcgcgatctgtcgatcatcgccacgccg
ccagcccgccgtttagcggtgaaaaccttcgtccgcgaatatgacaatctggtggtgcgc
gaagcgattctgcgtgaaactctgcgcggtggacaggtgtattacctctataacgacgtc
gaaaatatcgagaaagccacccagcggctggcagagttggtgccagaagcacgcatcgcg
atcggtcacggtcagatgcgcgaacgtgagctggaacgggtcatgaacgacttccaccac
cagcgttttaacgtgctggtatgtaccacgatcatcgaaaccgggatcgatatcccgagc
gctaacaccattatcatcgagcgtgccgatcacttcggtctggcacagttgcaccagctg
cgtggtcgtgtcgggcgctcccatcatcaggcttacgcctacctgctgacgccgaatcct
aaagcgatgagcaccgatgcgcagaagcgtctggaagcgattgcctcattggaagacctc
ggcgccggttttgcgttggccacgcacgatctggaaatccgtggcgcaggcgaactgctc
ggggacgatcagagcggacaaatgaccagcgtcggtttctcgctctatatggaattgctg
gaaagcgccgtcgaggccctgaaagcgggtcgggagccatcgctggaagatctgatcaac
agccagaccgacgtcgaactgcgtttgcctgccctgctgcctgacgatttcattcccgac
gtcaatacgcgtctgtcgttatacaaacgtatcgccagcgcgaaaaccaccaccgagctg
gatgagttgaaggtcgaactgatcgatcgcttcggtctccttcccgatgcaagtcgctat
ctgttgcagattgccgccttgcgtcagcaggcacaggcgctgggtattcgccgtattgaa
gggaatgaaaaaggtggatttatcgaattcagcgagcaaaaccgcgtcgatccgtcccac
cttatcggtctgttacagcgcgatccgggcacctaccgtctcgatggcccaacccgcctg
aaattcatgaaggatctgagcgaccgtccacagcgcatcgaatttatcggttcactgctg
gggaacatggcgcagcatacgctggcggcgtaa
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integrated database retrieval system
