Pectobacterium parvum: LOZ86_10580
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Entry
LOZ86_10580 CDS
T07916
Name
(GenBank) pectate lyase
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
ppav
Pectobacterium parvum
Pathway
ppav00040
Pentose and glucuronate interconversions
ppav01100
Metabolic pathways
ppav02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
ppav00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
LOZ86_10580
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
LOZ86_10580
Enzymes [BR:
ppav01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
LOZ86_10580
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_2
EFG_IV
Motif
Other DBs
NCBI-ProteinID:
UFK41220
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Position
complement(2329149..2330855)
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AA seq
568 aa
AA seq
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MKKFALSLLAGLVALQASAATPDRLTIVNQYVDNVLTKAGDHYHGQSPTPLLADGVDPRT
GKQMEWIFPDGRHAVLSNFSAQQNLMRVLVGLSNLSGNPSYKQRAEAIVKYHFQHYQDES
GLLIWGGHRFVDLKTLQPEGPSEKEMVHELKNAYPYYDLMFSVDKDATARFIRGFWNAHV
YDWKIMETSRHGKYGQKIGALWQSPFEQQPPFFATKGLSFLNAGNDLIYSASLLYKYNKE
DGALVWAKRLAQQYVLPRDKATGLGVYQFTQALKRDETTDDADTHSKYGDRAQRQFGPEF
GPTALEGNMMLKGRTSTIYSENALMQLQLGKDLGAEGKELLTWTTDGLKAFAKYAYNESD
NTFRPMLANGKDLSNYVLPRDGYYGKKGTVIKPYPADNSFLLSYARAYTVLPDAELWRVA
RGIARAQGLGELGSAPGKDVKVDLATKNNDPYALFALLDLYQASRVKDYLSLAEKIGDNI
ISTRYQNGFFMAEPDRQYADVDTIEPYALLALEAAVRNQPQSIAPFLNGAGFTEGGYRME
DGSTRVSTRDNEIFLLNVGETLKPNNKK
NT seq
1707 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaatttgcgctgtcgctccttgcgggtctggtcgctttacaggccagcgccgct
acgcctgaccgtctcaccatcgtcaatcagtatgttgataacgtgctgaccaaagccggt
gaccactatcacggtcagtcgcctacgccattacttgctgatggtgtcgatcctcgcacg
ggcaaacaaatggagtggatcttccccgatggtcgccacgccgtgttatctaatttctcc
gctcagcagaacctgatgcgcgtgctggtcgggctcagtaatctaagcggcaaccctagc
tataagcagcgtgccgaagcgatcgtgaagtatcactttcagcattatcaggatgagagc
ggcctgctgatttggggcggccaccgttttgtggatttaaaaacgctacagccggaaggc
ccgagtgaaaaagagatggtgcatgagctgaaaaatgcctatccctactacgatttaatg
ttcagcgtcgataaagacgcaaccgcacgctttatccgcggtttctggaatgcgcacgtt
tatgactggaagattatggaaaccagtcgccacggtaaatacgggcaaaaaataggtgcg
ctctggcaaagtccgtttgagcaacagccgcccttcttcgccaccaaaggcctcagcttc
ctgaatgcggggaacgatctgatctattccgcctcgctgctgtacaaatacaataaagaa
gacggcgcgctggtctgggcaaaacgtctggcacagcagtacgtgctgccacgggataaa
gcgaccggactcggcgtgtatcagtttacgcaggcgctgaagcgcgatgaaactaccgac
gatgccgatacgcattccaaatacggcgatcgcgcccagcgtcagtttggcccagaattc
ggccccactgcgctggaaggcaatatgatgctgaaaggacgcaccagcacaatctattcc
gaaaatgcgctcatgcagctccagttgggtaaagatttaggggcggaaggcaaagaactg
ctaacgtggacaaccgatggcctgaaagcctttgccaaatatgcctacaatgagtcagat
aacacattccgtccgatgctggctaacggcaaagatctttccaactacgttctgccgcgt
gatggttactacggcaaaaaaggtaccgtgatcaagccttatcctgcggataattcattc
ctgctttcctatgctcgcgcctataccgtgttaccagacgccgagctgtggcgtgtcgca
cgcggcatcgctcgcgcacaggggttaggtgagttaggttcagcaccgggtaaagacgtt
aaagtggatctcgccaccaagaacaacgatccttacgctctgttcgcgctgctggatctg
tatcaggctagcagagtgaaagactatctgtcgctggcggaaaaaataggcgataacatt
atcagcacgcgttatcaaaacggcttctttatggccgagcccgacagacaatatgccgat
gtcgataccatcgagccttatgccctgttagcgctggaagcggcagtgcgcaatcagcca
cagtccattgcaccgttcctgaatggtgccggcttcaccgagggtggctaccgtatggaa
gatggctcaactcgcgtgtccactcgcgataacgagattttcctgttgaacgttggcgaa
accttgaaacccaacaacaagaaataa
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