Pectobacterium parvum: LOZ86_11835
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Entry
LOZ86_11835 CDS
T07916
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
ppav
Pectobacterium parvum
Brite
KEGG Orthology (KO) [BR:
ppav00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ppav03016
]
LOZ86_11835
Enzymes [BR:
ppav01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
LOZ86_11835
Transfer RNA biogenesis [BR:
ppav03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
LOZ86_11835
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
UFK37690
LinkDB
All DBs
Position
2623531..2625465
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AA seq
644 aa
AA seq
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MFQDNPLLAQLKQQLHSQTPRVEGVVKGTDKGFGFLEADGQKSYFIPPPHMKKVMHGDRI
TATLHTEKEREIVEPETLIEPFLTRFVGRIHKKDDRLSITPDHPLLKDAIPCRAARDVTH
DFQEGDWAVAEMRRHPLKGDRGFHAELTQYITTGNDPLVPWWVTLSRHNLERTAPKVETT
ERHDGELVREDLTALSFVTIDSASTEDMDDALYVQDNGDGSLQLTIAIADPTAYVAAGSE
LDNIARQRAFTNYLPGFNIPMLPRPLSDDICSLRPDERRPVLACRVTIATDGALGDDIHF
FAAWIESKAKLAYDNVSDWLEDQGEWQPQNDAIAEQIRLLQRLCLARSEWRTTHALVFKD
RPDYRFLLGEKGDVLDIVVEHRRIANRIVEESMITANVCAAIVLRDKLGFGIYNVHNGFD
PASIEQAVAVLDTHGVQADAQALLTLGGFCTLRRELDAQPTQFLDSRIRRFQSFAEVSTT
PGPHFGLGLEAYATWTSPIRKYGDMVNHRLLKAVITGQAAEKPQDDVTVQLAERRRLNRM
AERDVGDWLYARYLKDKAGTDSRFNAEIIDVTRGGLRVRLLDNGAVAFIPSSFIHAVRDE
LVCSQEMGTLSVKGDVVYRQGDTLDVVIAEVRLETRSIVAKPAA
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaagataatccgctgcttgcacagctaaaacagcaacttcactctcagacaccg
cgtgttgaaggtgtcgtcaaaggcaccgataaaggatttggctttcttgaagctgacgga
caaaaaagctatttcattccccctccgcacatgaaaaaagtgatgcacggtgaccggatt
accgccaccctgcatacggaaaaagagcgggaaattgtcgagccagaaacgctgatcgaa
cccttcctgacccgatttgttgggcgcatccataaaaaagacgatcgcttatccattacg
cctgaccacccgctgctgaaagatgccatcccttgccgcgccgcgcgcgatgtcacgcac
gattttcaggaaggtgattgggccgtagccgaaatgcgccgtcacccgttgaagggcgac
cgtggatttcatgctgaactgacgcagtacatcaccacgggcaatgacccgctggtgccg
tggtgggtgacattgtcacgtcataatctggagcgcacagccccaaaggttgaaacgact
gagcgccatgacggcgaactcgtccgtgaagatctcaccgcgctgagctttgtcactatc
gacagcgccagcacggaagatatggacgatgcgctgtacgtgcaggacaacggtgatggt
tcgctgcaattaaccatcgctatcgccgacccgactgcgtatgtcgcggcgggtagcgag
ctggacaacattgcacgccagcgcgccttcaccaactatctgcctggcttcaacatcccg
atgctgccgcgcccgctgtcggacgatatctgttccctgcgcccggacgaacgtcgtcct
gtcctcgcctgccgcgtgacgattgccaccgacggtgcactgggtgacgacattcacttc
tttgccgcctggatcgaatccaaagccaagttagcgtatgacaacgtctctgactggctg
gaagatcaaggtgaatggcagccgcaaaatgacgcgattgccgaacaaattcgtttgctg
caacgtctctgtctggctcgtagcgaatggcgcaccactcacgcgctggtgtttaaagat
cgcccggattaccgcttcctgctgggtgagaaaggcgacgtgttggatatcgtggttgaa
catcgccgcatcgctaaccgtatcgttgaagaatccatgattacggccaacgtctgtgcg
gccattgtgctgcgcgataagctgggcttcggcatctataacgtgcataacggcttcgat
cctgcctcgatcgaacaagcggttgccgtattggatacccacggtgttcaagccgacgcg
caagcattgttgacgctgggtggcttctgtacgctgcgccgcgagctggatgcccaaccg
acgcagttcctggacagccgcattcgccgcttccagtcgttcgcggaagtgagcaccacg
ccggggccgcactttggtctggggctcgaagcctacgccacctggacatcgccgatccgt
aaatacggcgatatggtgaaccaccgtttgttgaaagcggttatcaccggacaggccgcg
gaaaaaccgcaggacgacgtcaccgtacaactggccgaacgccgccgccttaatcgtatg
gctgagcgtgatgtcggcgactggctgtacgcccgctacctcaaagataaagccggtacg
gatagtcgcttcaatgcggaaatcattgacgtcacgcgcggtggcctgcgcgttcgcctg
ctggataacggcgctgtcgcatttatcccgtcctcctttatccacgctgtgcgcgatgag
ctggtgtgcagtcaggaaatgggcaccctctcagtgaaaggcgacgtggtttatcgtcag
ggggatacgctggacgtggtcatcgctgaagttcgtctggaaacccgcagcatcgtggca
aaacctgccgcctaa
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