KEGG   Pectobacterium parvum: LOZ86_13900
Entry
LOZ86_13900       CDS       T07916                                 
Symbol
uvrB
Name
(GenBank) excinuclease ABC subunit B
  KO
K03702  excinuclease ABC subunit B
Organism
ppav  Pectobacterium parvum
Pathway
ppav03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:ppav00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    LOZ86_13900 (uvrB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ppav03400]
    LOZ86_13900 (uvrB)
DNA repair and recombination proteins [BR:ppav03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     LOZ86_13900 (uvrB)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      LOZ86_13900 (uvrB)
SSDB
Motif
Pfam: UvrB_inter UvrB_3rd UvrB Helicase_C ResIII UVR DEAD SBDS_domain_II AAA_30 UB2H AAA_22 DUF87
Other DBs
NCBI-ProteinID: UFK38049
LinkDB
Position
complement(3086742..3088754)
AA seq 670 aa
MSKVFTLNSDFKPAGDQPKAIRRLKEGLEDGLAHQTLLGVTGSGKTFTIANVIADLNRPT
MMLAPNKTLAAQLYGEMKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIE
QMRLSATKALLERRDVIVVASVSAIYGLGDPDLYLKMMLHLTQGMLIDQRAILRRLAELQ
YARNDQAFQRGTFRVRGEVIDIFPAESDEIALRVELFDEEVERLSLFDPLTGYVLQTVPR
YTIYPKTHYVTPRERILQAMEEIKVELVDRKRVLLANDKLVEEQRLSQRTQFDLEMMNEL
GYCSGIENYSRYLSGRGPGEPPPTLFDYLPADGLLVIDESHVTVPQIGGMYRGDRARKET
LVEYGFRLPSALDNRPMKFEEFEALAPQTIYVSATPGNYELEKSGGDVIDQVVRPTGLLD
PIIEVRPVATQVDDLLSEIRLRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDI
DTVERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG
RAARNLRGKAILYGDRITASMAKAIGETERRREKQEAYNTEHGIVPQGINKKISDILQLG
KPTNKGKGRGSRKAAEPAAGYELMTPKALELKIRELESKMLTHAQNLEFEEAAALRDEVH
ALRAQFIAVS
NT seq 2013 nt   +upstreamnt  +downstreamnt
atgagtaaagtatttacactgaattctgactttaaaccagcaggcgatcagccgaaggcc
attcgtcgtttaaaagagggcctggaagatgggttagcgcaccaaacgctgctcggggta
actggctcaggtaaaacgttcacgatcgccaacgtgattgccgaccttaatcggccgacg
atgatgctggcgccaaataaaacgctagcagcccagctgtacggcgaaatgaaagaattt
ttcccggataatgccgtcgagtacttcgtctcgtactacgattattatcagccagaagcc
tacgttccaagttcagacaccttcatcgaaaaagatgcgtcggttaacgaacatatcgaa
caaatgcgtctttctgcgacaaaagcgctgctggagcggcgcgatgtgatcgtcgtggct
tcggtgtccgcaatctatggtctgggcgatcccgatctctatctgaaaatgatgctgcac
ttgacgcaggggatgctgattgaccaacgtgctattttgcggcgtctggctgagttgcag
tatgcccgcaacgatcaggcgtttcagcgcggcacgttccgcgtgcgcggtgaggtgatt
gatatcttccctgcggaatctgacgaaatcgcgctgcgtgttgaactgttcgatgaagaa
gtcgagcggttgtcgctgtttgacccgctgacgggctacgtcctccagacggtgccgcgc
tataccatctatccaaaaacgcactacgtcacgccgcgtgagcgtattttgcaggcgatg
gaagagatcaaggttgagctggtcgaccgtaaaagggtgctgctggccaatgacaaactg
gtggaagagcagcgattgagccagcgcacgcagtttgatctggaaatgatgaacgagctg
ggctactgctccggtatcgaaaactactcacgctatctttccggtcgcggtcccggcgag
ccaccaccgacgctgtttgactatctgcctgcggacgggctgctggtcattgatgaatcc
cacgtcaccgtgccccagatcggcggtatgtatcgcggcgaccgcgcgcgtaaagagacg
ctggtcgaatacggtttccggctgccttcggcgttggataaccgaccgatgaaatttgaa
gaatttgaagcactggctccacagacgatctacgtgtctgcgacgccgggtaactatgaa
ctggaaaaatcgggcggtgacgtgattgatcaggtagtgcgtcccaccgggctgctcgat
ccgatcatcgaagtgcgacctgtcgcaacccaggtggacgacctgctttccgaaattcgc
ctgcgtgccgcaattaatgaacgggtgctggtaaccacgctgaccaagcgaatggcggaa
gacctcactgaatatctggaagaacacggcgagcgggtacgttatctgcactcggatatc
gataccgtcgaacgtgtggaaatcatccgtgatttacgtcttggcgagttcgacgtgctg
gtgggcatcaacctgctgcgtgaagggctggatatgccggaagtgtcgctggtggcgatt
ctggatgccgataaagagggtttcctgcgctctgaacgttccctgatccagacgattggc
cgtgcggcacgcaacctgcgtggcaaagccattctctacggcgacaggattactgcgtcg
atggcgaaagcgattggtgaaacggagcgccgccgcgagaagcaggaagcctacaacacc
gaacacgggattgtgccgcagggaatcaataagaagatctccgatatcctgcaactcggt
aagccgacgaacaaaggcaaagggcgtggcagccgtaaagcggcagagccagcagcaggt
tatgaactcatgacgccgaaggcgctggagctgaaaatccgcgagttggaaagcaagatg
ctgacgcacgcgcagaatcttgaatttgaagaggcggccgctctgcgcgatgaagtacac
gcactgcgcgcgcaatttattgctgtatcctaa

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