Pectobacterium parvum: LOZ86_14445
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Entry
LOZ86_14445 CDS
T07916
Name
(GenBank) polysaccharide lyase family 1 protein
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
ppav
Pectobacterium parvum
Pathway
ppav00040
Pentose and glucuronate interconversions
ppav01100
Metabolic pathways
ppav02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
ppav00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
LOZ86_14445
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
LOZ86_14445
Enzymes [BR:
ppav01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
LOZ86_14445
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GFIT
Motif
Pfam:
Pectate_lyase_4
Glyco_hydro_43
LRR_R13L1-DRL21
Motif
Other DBs
NCBI-ProteinID:
UFK38144
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Position
complement(3211084..3212652)
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AA seq
522 aa
AA seq
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MFRTVIGTGRLRTCAVAIALSGIVLSGCDNSQKPVAEAAPPDLQVKTAPFGWAAQYHNTD
GKFYATTGGEGAHENSIYVVTSRQELKDALNNIRSPRYIVGDADAELKAKLEPKIIYWQG
TIRGDDLGNGRYANAEDYKTKPNKTTFDFDLYVKAFDQNYMAQLKATADAGGGDAEAAST
QLSLLKKQNGQRSQYANNQKAQIQFQVPPNTTILGVGSEAKLVEGYLSLNTLSNTFGKTD
NSNIIIRNITFQAPRDFAPAWDAGDGDKGNWNARYDSVSINASKNVWIDHCTFTDGEYPD
HLEPVLFGKPIQRHDGLLDIEDGADYLTISYNIFGQHDKTVLIGSGDGDKGEYRITFEGN
LWDNSVQRSPRVRFGQVHLLNNYHRGATDTNYPILYAIGMGFDSSILSESNVFNFQGGGA
DEKLIIGAYKGSKFKDNGSWFNGNPASNLNQIALDKCSTLQEAEKAAATNSGKAVPAWAL
ETCTNELEWSPPYTYSAGKSIAAVEKYVLENAGAGKLDIALP
NT seq
1569 nt
NT seq
+upstream
nt +downstream
nt
atgtttagaacggttattgggactggtcgtttacgcacctgtgcggtagctattgccctt
tccgggatcgtgctttctgggtgtgataatagtcagaaacccgtagcagaagcggctccg
ccagatttgcaggtgaaaacggcaccgtttggttgggctgcgcaatatcataatacggat
ggtaaattttatgcgacgacggggggcgagggtgcgcatgaaaatagcatttatgtcgtc
accagccgtcaggaattaaaagatgcattaaataatatccgcagcccccgttatatcgtc
ggtgatgccgatgcggaattgaaggcaaaattagaacccaaaattatctactggcaaggt
actatccgtggtgatgacttaggcaatggacgctatgccaatgctgaggattataaaact
aaaccgaataaaacaacgtttgattttgatttatacgtcaaagcgttcgatcaaaattat
atggcgcagttgaaagcgacggcggatgccggtggaggcgacgcggaggcggccagtaca
cagcttagcctgttgaaaaagcagaatggtcaacgttcgcagtatgccaacaaccagaag
gcgcagattcaatttcaggtaccacccaataccacgattttaggcgtgggtagcgaagcc
aaactggtggaaggctatttatccctcaatactctgagcaacacgttcggcaaaacggat
aacagcaacatcattatccgtaatattacgtttcaggcaccgcgtgactttgctcccgct
tgggatgcgggcgacggcgataaaggcaactggaatgcgcgttatgattccgtatcgatt
aatgccagcaaaaatgtctggatcgatcactgcacgtttacggacggtgaatatccagat
catttagaaccggtgctatttggtaagcctatccagcgccacgacggcttgctggatata
gaagacggtgccgattacctgacgatttcctacaacatcttcggccaacatgacaaaacg
gtattaattggctccggcgatggtgataaaggggaataccgaatcacgtttgaaggcaat
ttatgggacaacagcgtgcagcgttcaccgcgcgtgcgttttggtcaggtgcatttgctg
aataactaccatcgtggggcaacggatacgaattaccccattctgtacgccattgggatg
ggcttcgattcatccattctttccgaaagtaacgtgtttaatttccagggcggcggggcg
gatgaaaagctgattatcggtgcctacaagggaagcaaatttaaagacaacggctcctgg
ttcaatggcaatccggcaagcaatttgaatcaaatcgcattagacaaatgcagcacattg
caagaagccgagaaggcagctgccacaaattctgggaaagctgtacctgcatgggcgctg
gaaacctgcaccaatgaactggaatggagcccgccttatacgtatagcgcagggaaatcc
attgccgccgttgagaaatacgtcctggagaatgccggtgcggggaaactggatattgct
ctgccgtag
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