Pectobacterium parvum: LOZ86_17955
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Entry
LOZ86_17955 CDS
T07916
Name
(GenBank) rhamnogalacturonan lyase
KO
K18197
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
ppav
Pectobacterium parvum
Brite
KEGG Orthology (KO) [BR:
ppav00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
LOZ86_17955
Enzymes [BR:
ppav01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
LOZ86_17955
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Gene cluster
GFIT
Motif
Pfam:
RGL11_C
RGI_lyase
FG-GAP_3
FG-GAP
PQQ
Motif
Other DBs
NCBI-ProteinID:
UFK41404
LinkDB
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Position
complement(3981285..3983105)
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AA seq
606 aa
AA seq
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MTSAYAAGKSKQIELLDRGLFAFKSSKHVFLSWRLFATDPENIAFNLYRDGQLINPSPLS
TTTNFIDPDGKADSIYAIRPVIKGVEGKEDVAKSVLNGQRYQSIPLKKPADGVTPKGDTY
SYGVNDGSVGDLDGDREYEYVIKWAPSNSKDNAHSGYTGNVYIDAYKQDGTRLWRIDLGR
NIRSGAHYNDFIVYDLDGDGKAEVMMKTADGTVDGTGKVIGNSQADYRSNNGYILTGPEY
LTVFNGQTGKAMATVDYLPERGDVCGWGDCYGNRVDRFLAGVAYLDGERPSAVFSRGYYR
RAVVVAWDWRNGKLTKRWTYDSGTAGDVLNTAYGQGAHHLRTGDADGDGKDDIIFGAATI
GSNGKLLNSTGLGHGDALHFGVLDPSRTGKQVFMVHESASQYGNNAMEMHDAATGKILWG
YSNGSGGDNGRGVCMDVDPAHLGVECWSSQGGLFNTKGERISDKKPSQINFAIWWDGDLL
RESWDRATIDKWIPAKEKTERVFSAYTYNSGTWINGTKATPVLSADLFGDWREEFIIPKS
DSSELQIFSTTSETTYRMPTLMHDPAYRTQVAAQNAGYNQPPHTSFYLGEGMTFPVKWES
VYTVPK
NT seq
1821 nt
NT seq
+upstream
nt +downstream
nt
atgacgtcggcttatgcggcaggaaaaagtaagcaaattgaattgctggatcgcggactg
tttgcattcaaatcatcgaaacatgtttttttaagctggcggcttttcgctactgacccc
gaaaacattgcttttaatctctatcgagatggtcaactcatcaatccttcccctctgagt
acaacgactaactttatcgatccggatggtaaagccgattctatttatgcgatacgtccg
gtcattaagggcgtcgaaggaaaagaggacgtcgctaaatcagtactgaacggccagcgt
tatcagtctattccgttaaagaaacctgccgatggggtgacgccaaagggtgacacctat
tcctatggtgtgaatgatggatcggttggcgatctggatggcgatcgcgaatacgagtat
gtgatcaagtgggcaccgagtaactcaaaagataatgcgcactctggctacactggcaac
gtttatattgatgcctataagcaggatggaacgcggctgtggcgcattgatttaggaagg
aatatccgatctggagcacattacaacgatttcatcgtgtatgacctggatggtgatggc
aaagcggaagtgatgatgaaaaccgccgatggtacggtggatggtacaggaaaggttatc
ggtaatagtcaggcggattaccgtagtaacaacggttatattctcactgggcctgaatac
ctgacggtatttaatggccaaaccgggaaagcgatggcgacagtggattacctccccgaa
cgtggtgatgtgtgcggctggggtgactgctatggtaatcgcgttgaccgttttctggcg
ggtgtcgcctatcttgatggggaacgccctagtgcggtattttcgcgtggttattaccga
cgcgccgtggttgtcgcgtgggactggcgtaatggcaagctgacgaaacgctggacgtat
gacagcggaacggctggtgatgtgctgaacacggcgtatgggcaaggcgcacaccacctt
cgtactggcgatgcggatggcgatgggaaagacgacattatctttggcgcagcaacgatc
ggcagcaacggcaagctattgaattccactggcttgggacatggtgatgcgctgcacttt
ggcgtgctcgatccttcgcgtaccggtaagcaggtctttatggtgcatgagtccgcgagc
cagtatggtaataacgcgatggagatgcacgatgccgccacgggcaagatcctttgggga
tatagtaacggttcgggtggtgataatgggcgcggcgtctgtatggatgtcgatcccgct
cacttaggggtggaatgctggtcttcgcaaggcgggttgtttaatacgaaaggcgagcgg
atttccgataagaaaccatcgcaaatcaattttgctatctggtgggatggcgatctgctg
cgtgagtcatgggatcgcgcgacgattgataaatggataccggctaaagagaaaaccgag
cgggtgttcagcgcttatacctacaattcggggacgtggataaatgggacgaaagcgaca
cccgtcctgagtgccgatctgtttggcgactggcgtgaagagttcattattcccaagtct
gatagtagcgaactacagattttcagcacgacgtcggaaaccacataccgtatgccaacg
ttgatgcacgacccggcctatcggacacaagtcgcggctcagaatgcgggctataaccag
ccgccgcataccagcttctatcttggtgaaggaatgacgtttccggtaaaatgggaaagt
gtttataccgtacctaaataa
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