Pectobacterium parvum: LOZ86_18300
Help
Entry
LOZ86_18300 CDS
T07916
Symbol
rapA
Name
(GenBank) RNA polymerase-associated protein RapA
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
ppav
Pectobacterium parvum
Brite
KEGG Orthology (KO) [BR:
ppav00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppav03021
]
LOZ86_18300 (rapA)
Transcription machinery [BR:
ppav03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
LOZ86_18300 (rapA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RapA_C
Tudor_RapA
Tudor_1_RapA
SNF2-rel_dom
Helicase_C
ResIII
DEAD
Cas3-like_C_2
AAA_34
Motif
Other DBs
NCBI-ProteinID:
UFK38822
LinkDB
All DBs
Position
4063999..4066902
Genome browser
AA seq
967 aa
AA seq
DB search
MPFTLGQRWISDTESELGLGTVVAVDTRMITLLFPASGENRLYSRSDAPITRVMFNPGDT
VTSHEGWQLKVDDVREEKGLLVYCGQRLDDETSAELREVFLDSKLTFNKPQDRLFAGQID
RMDRFALRYRARKHQNEQALQQWGGLRGMRASLIPHQLHIAHEVGQRHAPRVLLADEVGL
GKTIEAGMIIHQQLLAGRASRVLIVVPETLQHQWLVEMLRRFNLLFSLFDDERYAEAKLD
SSNPFETEQLVICSLGFVQRSAQRFAQLVNADWDLLVVDEAHHLVWSEESPSPEYQAIET
LARATPAVLLLTATPEQLGQQSHFARLRLLDPNRFHDYQEFVAEQQQYRPVADAVTLLLA
GEKAQTAELNALSDLLGEQDIEPLLKAINSDSDDNQKARQELITMLMDRHGTSRVLFRNT
RQGVKGFPHRVLHQIRLPLPAQYQTAIKVSGIMNANKALEVRARDMLYPEQIYQQLEGDD
ATWWNFDPRVEWLLNYLTANRDEKILVICAQAATALQLEQVLRTREAIRAAVFHEGLSIL
ERDRAAAYFASEEEGAQVLICSEIGSEGRNFQFASHLVMFDLPFNPDLLEQRIGRLDRIG
QAKEIQIMVPYLENTAQALLVRWYHEGLDAFEHTCPTGRTIYDAHHAQLIERLTTVGEQQ
GLDEFIHVCRQQHDSLKQQLEQGRDRLLEMHSNGGEQAQLLAQAIAEKDNDVNLVTFALN
LFDIVGINQEDRSDNLIILTPSDHMLVPDFPGLPQDGCTITFDRDQALSREDAQFISWEH
PLIRNGLDLVLSGDTGSCAVSLLKNKALPVGTLLAELVYVVEAQAPKHLQLTRFLPPTPV
RLLMDRKGTNLAEQVEFESFNRQLNAVNRHTSSKLVNAVQPDVHAMLQQAEALVETQACQ
LITEAQEQADLQLRRELERLEALKAVNPNIREDELTALENQREQVLSNLHEANWRLDAIR
LVVVSHQ
NT seq
2904 nt
NT seq
+upstream
nt +downstream
nt
atgccttttacacttggtcagcgctggatcagcgatacggaaagcgaacttggactggga
acggttgttgccgtcgatacacgtatgattacgctgcttttccctgccagcggtgaaaac
cgactttattcccgcagcgacgcccccatcacccgcgtgatgttcaatcccggcgatacc
gtcaccagccatgaaggctggcagctcaaagtggatgacgtgcgagaagaaaaagggttg
ctggtgtattgcggccaacgcctggacgatgaaacgtcggcggaactgcgtgaagtcttc
ctcgacagcaaactgacgttcaacaaaccgcaagatcgcctgttcgccggacagatcgat
cgtatggatcgctttgctctgcgctatcgcgcccgtaagcaccagaacgagcaggctctg
caacagtggggcggattgcgtggcatgcgtgccagccttatcccccatcagcttcatatc
gctcatgaagtcggccaacgccacgcgccacgcgttttgctggcggacgaagtcggtctg
ggaaaaaccattgaggcagggatgatcatccaccagcagctgctggcgggtcgtgccagt
cgcgtgctgattgtcgtgccggaaaccttgcaacatcagtggctggtcgaaatgctgcgc
cgctttaacctgctgttctcactgtttgacgacgagcgctatgccgaagccaagctggac
agcagcaatccgtttgaaactgaacagctggtgatctgctcactgggatttgttcaacgc
agcgcccagcgctttgcgcagctcgtcaacgccgactgggatctgctggtggtggatgaa
gcccaccatctggtctggagcgaagaaagccctagcccggaatatcaggccattgaaacg
ctggcacgcgccacgccagccgttctgctcttaacggcaacgccagaacagctcggccaa
cagagccactttgcgcgcttacgcctgctcgatcccaaccgtttccacgactatcaagaa
ttcgttgctgaacagcagcagtaccgcccggttgccgatgccgtcacgctgctgttagca
ggcgaaaaagcccaaacggctgaactgaatgcgctaagcgatctgctgggcgagcaggac
attgaaccactgctgaaagccatcaacagcgacagcgatgacaatcagaaggcgcgtcag
gaactgatcaccatgctgatggatcgccacggcaccagccgtgtgctgttccgtaacacg
cgtcagggggttaaaggcttcccgcatcgtgtcctgcatcaaatccgcctgccgctgccg
gcgcagtaccaaacggcgattaaagtgtccggcattatgaacgcgaacaaggcgctggaa
gtccgcgcccgcgacatgctgtacccggaacaaatttatcaacagctcgaaggggacgat
gccacctggtggaacttcgatccacgcgtagaatggttactgaactacctgaccgccaat
cgtgatgaaaaaatcctggtgatctgtgcacaggcagccaccgcgctacagctggaacaa
gtgctgcgcacgcgtgaagccatccgcgccgccgtcttccatgaagggctgtcgattctt
gaacgtgaccgtgccgccgcctattttgcttctgaagaagaaggcgcacaggtgctgatt
tgttcagagatcggttccgaaggccgtaacttccagtttgccagccatttagtgatgttc
gatctgccgtttaaccccgacctgctggaacagcgtattggtcgtctggaccgtatcggg
caggcaaaagaaattcagatcatggtgccgtatctggaaaataccgcgcaggccttgctg
gtacgttggtatcacgaaggattggatgcgtttgaacacacctgtccgacgggccgtacc
atctatgacgcgcaccatgcgcagttgatcgagcgactgacgacggtcggtgaacagcag
ggactggatgagtttatccatgtttgccgtcaacagcacgatagcctgaagcaacagctt
gaacaaggccgcgatcgcctgctggaaatgcattctaacggtggcgaacaggctcaactg
ttagcgcaggccattgccgaaaaggataatgacgtcaatctggtgacgttcgccctgaac
ctgtttgatattgttggcattaatcaggaagatcgcagcgataacctgatcatcctgacg
ccatccgatcatatgctggtgccagacttcccgggcctgccgcaggacggctgtacgatc
accttcgatcgcgatcaggcgctctcccgcgaagacgcacagtttatcagttgggaacat
ccgctcatccgtaacggactcgatctggtgctgtccggcgataccggaagctgtgcagtg
tcgctgctgaaaaataaagcgctgccagtcggcacgctgctggctgagctggtttacgtg
gtggaagcacaggcaccgaaacacctgcaactgacccgcttcctgccgccaacaccggtt
cgcctgctgatggaccgtaaaggcaccaatctggcggagcaggttgagtttgagagcttc
aaccgccagctcaacgccgtaaaccgtcatacgtccagcaagctggtgaatgcggtacag
cccgatgttcacgccatgctgcaacaagcggaagcgctggtagaaacgcaggcgtgccag
ctcatcaccgaggctcaggagcaggctgacctgcaattgcgccgcgaactggaacgtctg
gaagcgctgaaagccgtcaaccccaacattcgtgaagatgagctgaccgcactggaaaac
cagcgcgagcaggtgctgagcaacctgcacgaagccaactggcgtctggatgctattcgt
ctggttgtggtgtcacatcagtaa
DBGET
integrated database retrieval system
