Pectobacterium parvum: LOZ86_19785
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Entry
LOZ86_19785 CDS
T07916
Symbol
rtcR
Name
(GenBank) RNA repair transcriptional activator RtcR
KO
K14414
transcriptional regulatory protein RtcR
Organism
ppav
Pectobacterium parvum
Brite
KEGG Orthology (KO) [BR:
ppav00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ppav03000
]
LOZ86_19785 (rtcR)
Transcription factors [BR:
ppav03000
]
Prokaryotic type
Other transcription factors
Others
LOZ86_19785 (rtcR)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcR
Sigma54_activat
Sigma54_activ_2
AAA_lid_14
AAA_16
AAA_5
Mg_chelatase
AAA
NACHT
AAA_22
AAA_19
AAA_14
MCM
T2SSE
AAA_7
BrxC_BrxD
AAA_30
AAA_2
TsaE
ABC_tran
AAA_33
AAA_29
ATPase_2
Motif
Other DBs
NCBI-ProteinID:
UFK39084
LinkDB
All DBs
Position
4393773..4395359
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AA seq
528 aa
AA seq
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MKRRVVIGVLGTTLDKRGKRENRWTKWRPTVGLCQQPDFPVDRLELLHQSRNEGMAQQVA
EDIAVVSPATRVTLQAVELRDPWNLEEVYSAFLDFASRYPFDTENEEYFVHITTGTHVVQ
ICWFLLTEARYLPAKLLQTAPGEKTDRPAPQGIYSVIDLDLSRYATLTSRFQHEQEHSVS
FLKSGIETRNATFNTLIDQIERVALRSTAPMLLTGPTGAGKSFLAQRIYQLRQSRHLVSG
RFVAVNCATLRGDNAMSTLFGHVKGAFTGALQARTGLLREADGGMLFLDEIAELGLDEQA
MLLKAIEEKRFLPFGSDKEVSSDFQLIAGTHRNLHEWIAQGKFREDLYARINMWTFPLPG
LAERREDIEPNIEYELQRFTRDHQTQIRFDKDARQRYLAFASSSQAAWRGNFRELGSSIA
RMATLAEQGRITVALAEEEITRLRASWQSNAPTTALSELPPELANIDLFEQRQLETVLDV
CRTSNSLSEAGRRLFAVSRKQKQKPNDADRLRKYLARFGLSWEGLKRV
NT seq
1587 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgtcgcgtcgtcattggtgtgctgggcaccacgctggacaaacggggtaaacgg
gaaaatcgctggacgaaatggcggcccaccgttggcctgtgccagcagccggattttcca
gtcgaccgtctggaactgctgcaccagtcacgcaacgaaggaatggcacaacaggtggcg
gaggatatcgccgtggtgtcacccgccacgcgggtcacgcttcaggccgttgaactgcgc
gacccgtggaatctggaagaggtctacagcgcctttctggactttgcgagccgctacccg
ttcgataccgagaacgaagagtatttcgttcacatcaccaccggcacccacgtcgtgcag
atttgctggttcctgttaaccgaagctcgctatctgcccgccaagctgctgcaaactgca
ccgggagagaaaacggatcgaccggcaccgcagggcatctactccgtcatcgatctggat
ctcagccgctatgctaccctcaccagccgcttccaacatgagcaggagcactcggtctcg
ttcctgaaatcaggcatcgagacgcgtaatgccacgttcaatacgctgatcgaccagatt
gaacgcgtcgcactgcgttccaccgcaccgatgctcttaaccggcccaaccggtgcgggg
aaatcctttctggcacagcgtatctaccagctacgccagtcgcggcatctggttagcggt
cggtttgttgcggttaactgtgccacgctgcgcggcgacaatgcgatgtcgacactattc
ggtcacgtcaaaggcgcgtttactggtgcattgcaggccagaaccggactgctacgtgaa
gcggacggcgggatgctgtttctggatgagatcgccgaactcgggctggatgaacaggcc
atgctgctcaaggccatcgaagaaaaacgctttttgccctttggctcagataaagaagtc
agcagcgatttccagctgatcgctggcacacaccgcaacctgcacgaatggatcgcacag
ggcaaatttcgtgaagatctctacgcccgtatcaacatgtggactttccctctaccgggg
ctggcggaacgtcgggaagatatcgaaccgaacattgagtatgaactccagcgcttcaca
cgagatcaccaaacacagatccgcttcgataaagacgcccgacagcgctacctcgccttt
gctagctcgtcacaggcagcatggcgcggaaacttccgcgaactcggttcctccattgcc
cgcatggcgacactggcggaacaagggcgcatcaccgtggcactagcagaggaagaaatc
actcgcctgcgggccagttggcagagcaatgccccgacaaccgcgctatccgagctgccg
cccgaactcgccaacatcgacctcttcgaacagcgccagcttgaaaccgtgctcgacgtc
tgtcgcacctcaaactcgctctccgaagcaggccgccgcctcttcgccgtctcacgcaag
caaaaacagaagcctaatgatgccgatcgattgcgtaaatatctggcacgttttgggctg
agctgggaggggttgaagcgggtataa
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