Pectobacterium parvum: LOZ86_20585
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Entry
LOZ86_20585 CDS
T07916
Symbol
csrD
Name
(GenBank) RNase E specificity factor CsrD
KO
K18765
RNase E specificity factor CsrD
Organism
ppav
Pectobacterium parvum
Brite
KEGG Orthology (KO) [BR:
ppav00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppav03019
]
LOZ86_20585 (csrD)
Messenger RNA biogenesis [BR:
ppav03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
LOZ86_20585 (csrD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EAL
GAPES4
GGDEF
Questin_oxidase
Sigma_reg_N
Motif
Other DBs
NCBI-ProteinID:
UFK39235
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All DBs
Position
complement(4563215..4565152)
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AA seq
645 aa
AA seq
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MGFTTRFSILIVLLTVLAIFLMLFSSIFSLCYYSQLRTEQQLREVTASIDQALLVQSPEN
IHYWLPGMMKTAGIVALDIQDNDSTLYSIQLPEAGWERTHLYHEVEFPLMHHLNMTIALK
YVDPLIGLPRFVVSTLSVLLAAGLMLLMLYFSIRWLRRQAAGQEELEKRAQRILKGERES
VMQGSVREWPVKTSGALDQLLSDLVEAREERGRVDTLIRAFAAQDAETGLSNRLFFDNQL
TTQLEDGEEVGTHGVVMMIRVPDFETLQETHGYTNALQEYRFTLVNLLSTFVMRYPSALL
ARYFSSDFTVLLPHSTLKEATAIATQLVKSIDILPACPLIDREEVLRMGICAYRGGQSAE
QVMESVEDATRNAVLQGGNSWCVFDRQVPDKGRGSVKWRTLLEQTLARGGPRLYQKPAVT
KEGVVHHREMMSRIYDGEQELLAAEYMPLVQQLGLAASYDRQLVARIIDLSANWPGETLA
LPVSVDSLLQKPFLRWLREILLQCPKTQRQCILFELAEADVCQYIGRLRPVLNLILGLGC
RLAVTQAGLTLVSTTYIKSLSVEIIKLHPGLVRSLERRPENQLFVQSLTEACKGTQTRVF
AAGVRTKEEWRMLLGKGVYGGQGDFFAASVPITDELKKYSPRHRV
NT seq
1938 nt
NT seq
+upstream
nt +downstream
nt
atgggatttacgaccaggttctcgatactcatagtattgctgacggttctcgctattttt
cttatgcttttcagtagcatatttagcctctgttattatagccagttgcgaactgagcag
cagctacgcgaggtcacggccagtatcgatcaagcgttattagtgcaatcgcccgaaaat
atccactattggctgccgggaatgatgaagacggcaggcattgtggcgttggatattcag
gataacgattcgaccctctattcaatacagctgcccgaggccggttgggaacgcacgcac
ctctatcatgaggtcgaatttccgctgatgcatcatttgaacatgacgatcgccttaaaa
tatgtcgacccgctgattggtttaccgcggttcgtggtgtcgacgttatcggtattgctg
gccgcgggtctgatgctcctgatgctgtatttctccattcgctggctgcgccggcaggct
gctggacaggaagaattggaaaaacgcgcacagcgtattctcaagggcgagcgggaatcg
gttatgcaggggtcggtacgtgaatggccggtcaagaccagcggggcgctcgaccagctg
ctgtctgatttagtggaagcgcgtgaggagcgtggacgggttgatacgttaatccgtgct
ttcgccgcgcaggatgctgaaactgggctgagtaatcgtttgttttttgataatcagttg
accacacaactggaagatggcgaagaggtggggacgcacggcgttgtcatgatgattcgc
gtacctgattttgaaaccttgcaagaaacgcacggctataccaatgcgcttcaggaatac
cgtttcacgctggtcaacctgctatcgacgtttgtcatgcgttatccctctgcgctgctg
gcgcgttatttcagcagcgatttcaccgtattactcccccacagcacgctaaaggaagcc
actgcaattgccacgcagttggtgaagtctatcgatattcttcccgcctgcccgttgatc
gatcgcgaggaggttctccgcatgggtatttgtgcctatcgcggcgggcaaagcgccgag
caggtgatggaaagtgtggaggacgcgacgcgcaatgcggtgttgcagggcggtaacagc
tggtgcgtgtttgacaggcaggtgcctgacaaagggcgcggcagcgtgaaatggcgtacg
ttgctggaacaaacgctggcacgcggtggcccacggctgtatcagaagcctgcggtgaca
aaagagggcgtggtacatcatcgcgaaatgatgagccggatttatgacggagaacaggaa
ctgctggcggcggagtatatgccgctggttcaacagctggggctggcagctagctatgat
cggcagcttgtggctcgaattattgatttgtcagcgaactggcccggagaaacactggct
ttgccggtaagtgtggactcacttttgcaaaagcctttcctgcgctggctaagagaaata
ttgctgcaatgtccgaaaacgcagcgtcagtgcattttatttgaacttgcagaggcggat
gtctgtcaatatatcggccgcctgcgcccggttctcaatttgatcctgggattaggctgt
cgcctggcggtcacgcaggcgggtttaacgctagtcagtacgacgtatatcaagtcactc
tccgtggagatcatcaagcttcatcccggtttggttcgcagtcttgagcgccgcccggaa
aatcagctgtttgtacaaagcctgaccgaggcctgtaaaggcacgcaaacgcgggtgttt
gccgctggtgtgcgaaccaaagaggagtggcggatgctgttgggtaagggcgtttatggt
gggcaaggcgatttttttgccgcatcagtccctataacggatgagctgaaaaaatattca
ccgcggcatcgtgtttaa
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