Pseudomonas putida BIRD-1: PPUBIRD1_0021
Help
Entry
PPUBIRD1_0021 CDS
T01975
Symbol
uvrD
Name
(GenBank) UvrD
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
ppb
Pseudomonas putida BIRD-1
Pathway
ppb03420
Nucleotide excision repair
ppb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ppb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PPUBIRD1_0021 (uvrD)
03430 Mismatch repair
PPUBIRD1_0021 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppb03400
]
PPUBIRD1_0021 (uvrD)
Enzymes [BR:
ppb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PPUBIRD1_0021 (uvrD)
DNA repair and recombination proteins [BR:
ppb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PPUBIRD1_0021 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
PPUBIRD1_0021 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
PcrA_UvrD_tudor
AAA_12
AAA_11
AAA_22
DUF5681
Motif
Other DBs
NCBI-ProteinID:
ADR57731
LinkDB
All DBs
Position
20574..22760
Genome browser
AA seq
728 aa
AA seq
DB search
MRTDDLSLLLNSLNDAQRQAVAATLGRQLVLAGAGSGKTRVLVHRIAWLIQVEQASPHSI
LSVTFTNKAAAEMRQRIEQLLGINPAGMWVGTFHGLAHRLLRAHWQEARLVQNFQILDSD
DQQRLIKRVMRELGLDEQKWPARQAQWFINGQKDEGLRPQHIQAGGDLFLATMREVYTAY
EQACERAGVIDFSELLLRALDLWRDHPGLLEHYQRRFRHVLVDEFQDTNAVQYAWLRLLA
RGGDSLMAVGDDDQSIYGWRGAKIENIHQYTADFPDAEMIRLEQNYRSTGGILKAANALI
ANNSGRLGKELWTDMGEGEPLTLYAAYNEHDEARYVVETIESLVKQGNARNEIAILYRSN
AQSRVLEEALLRERIPYRIYGGQRFFERAEIKNAMAYLRLIEGRGNDAALERVINVPPRG
IGEKTVEAIREHARHSQLSMWEAMCQLLAAKALKGRAASALGAFIELIEGLAAKVVDMPL
HTMTQTTIEQSGLITYHQEEKGEKGQARVENLEELVSAARNFESTDEDADLSPLSAFLGH
ASLEAGDTQADEHEDSIQLMTLHSAKGLEFPYVFLVGMEEGLFPHKMSLEEPGRLEEERR
LAYVGITRAMRQLVMTYAETRRLYGSETYNKVSRFVREIPAGLVQEVRLSNSVSRPFGGA
KTATNSNLFANASIPQTAFNLGQRVQHAVFGEGVILNFEGSGAQARVQVNFAEGSKWLML
GYAKLEAV
NT seq
2187 nt
NT seq
+upstream
nt +downstream
nt
atgcgcacagacgacctctctctcctgctgaattccctcaacgatgcccaacgccaggcc
gtagcggccacgctcgggcgtcaactggtgcttgccggcgccggttccggtaaaacccgc
gtgctggtacaccgcatcgcctggctgatccaggtcgagcaggcgtcgccgcactcgatc
ctgtcggtgacgttcaccaacaaggccgcagcagaaatgcgccagcggatcgagcaactg
ctgggcatcaacccggcaggcatgtgggtcggcaccttccacggcctggcccatcgcctg
ttgcgggcccactggcaggaagcgcggctggtgcagaacttccagatcctcgacagcgac
gaccagcagcgcctgatcaagcgggtcatgcgcgagttgggcctggacgagcagaagtgg
ccggcacgccaggcccagtggttcatcaacgggcagaaagacgaaggcctgcgcccgcag
catatccaggcggggggcgacctgttcctggcgaccatgcgcgaggtctatacggcctac
gagcaggcttgcgagcgcgccggtgtcatcgatttctccgagctgctgcttcgcgccctg
gacctgtggcgtgaccacccgggcctgctggagcactatcagcgacgcttccgccacgtg
ctggtggacgagttccaggataccaacgccgtgcagtacgcctggttgcgcctgctggca
cgcggtggcgacagcctgatggcggtaggcgatgacgaccagtcgatctacggctggcgc
ggcgccaagatcgaaaacattcaccagtacaccgccgacttccccgacgccgaaatgatc
cggctggagcagaactaccgctccaccggcggcatcctcaaggcggccaacgcgctgatc
gccaacaacagcgggcgcctgggcaaggaactgtggaccgacatgggcgaaggcgaacca
ctgaccctgtacgcggcctacaacgagcacgacgaagcgcgctatgtcgtggaaaccatc
gagagcctggtcaagcagggcaatgcgcgcaacgagatcgccatcctgtaccgttccaac
gcccagtcgcgcgtgctggaagaggccctgctacgcgagcgcatcccctaccgcatctat
ggcggccagcgcttcttcgagcgcgccgaaatcaagaatgccatggcttacctgcgcctg
atcgaagggcgtggcaacgatgccgctctggagcgggtgatcaacgtgccgccgcgcggt
attggcgaaaaaaccgtcgaagccatccgcgagcacgcccgtcacagccagctgtccatg
tgggaggccatgtgccagctgctcgccgccaaggccctcaaaggccgcgccgccagtgcc
ctgggggcctttatcgagctgatcgaggggctggccgccaaagttgtggacatgccgctg
cataccatgacccagaccaccatcgaacagtccggcctgatcacctatcaccaggaagaa
aagggtgaaaagggccaggcacgggtagaaaaccttgaggaactggtcagtgcggcacgc
aacttcgagtccaccgacgaagacgccgacctttccccgctctcggccttccttggccat
gcctcactcgaagctggcgatacacaggctgatgagcatgaagacagcatccagctgatg
accctgcacagcgccaaaggccttgagttcccatatgtgttcctggtgggcatggaagaa
ggcttgttcccgcacaagatgagcctggaagaacccggccgcctggaagaggagcgacgc
ctggcctatgtaggcatcacccgcgccatgcgccagctggtcatgacctacgccgaaaca
cgccgcctttatggcagcgagacttacaacaaggtttcgcgtttcgtgcgtgaaattccg
gcaggcctggttcaggaagtacgcctgtccaacagcgtcagccgcccgttcggcggggcc
aagacggccaccaacagcaacctgttcgccaatgccagcattccgcagaccgcgttcaac
cttggccagcgtgtgcagcatgcggtattcggcgaaggtgtgatcctcaacttcgagggt
tctggcgctcaggcgcgggtgcaggtgaattttgccgaaggtagcaaatggctgatgctg
gggtatgccaagctcgaggctgtctaa
DBGET
integrated database retrieval system
