Pseudomonas putida BIRD-1: PPUBIRD1_0424 Help Entry PPUBIRD1_0424     CDS       T01975                                  Symbol rpoD Name (GenBank) RpoD   KO K03086   RNA polymerase primary sigma factor Organism ppb  Pseudomonas putida BIRD-1 Pathway ppb02040   Flagellar assembly Brite KEGG Orthology (KO) [BR:ppb00001]  09140 Cellular Processes   09142 Cell motility    02040 Flagellar assembly     PPUBIRD1_0424 (rpoD)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03021 Transcription machinery [BR:ppb03021]     PPUBIRD1_0424 (rpoD) Transcription machinery [BR:ppb03021]  Prokaryotic type   Bacterial type    RNA polymerase     Sigma factors      PPUBIRD1_0424 (rpoD) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Sigma70_ner Sigma70_r1_1 Sigma70_r3 Sigma70_r2 Sigma70_r4 Sigma70_r1_2 Motif Other DBs NCBI-ProteinID:  ADR58118 LinkDB All DBs Position complement(494320..496170) Genome browser AA seq 616 aa AA seqDB search MSGKAQQQSRIKELITRGREQGYLTYAEVNDHLPEDISDPEQVEDIIRMINDMGINVFES APDADALLLAEADTDEAAAEEAAAALAAVETDIGRTTDPVRMYMREMGTVELLTREGEIE IAKRIEEGIREVMGAIAHFPGTVDYILGEYDRVTTEGGRLSDVLSGYIDPDDNIAAPTEE VPIPGAKAAAAKEESDDDEEESESGDDEEEAESGPDPVVAAQRFGAVSDQLQATSKVLKK NGRNHKESIEALQALADLFMPIKLVPKQFEVLVERVRDALNRLRQQERAIMQLCVRDARM PRADFLRMFPSNETDQTWSGDLAKRNTKWAAALGEKNAAIVACQQKLIDLETETGLTVAE IKEINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVD KFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGRE PTPEELGERMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTMQSPIDVATV ESLKEATRDVLSGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRK LRHPTRSEHLRSFLDE NT seq 1851 nt NT seq  +upstreamnt  +downstreamnt atgtccggaaaagcgcaacagcagtctcgtatcaaagagttgatcacccgcggtcgtgag cagggctacctgacttacgcggaggtcaacgaccacctgcctgaggatatttcagatccg gaacaggtggaagacatcatccgcatgatcaacgacatggggatcaacgtattcgagagt gctccggatgcggatgcccttctgttggcggaagccgacaccgatgaagccgcggccgaa gaagccgctgctgcattggcggcagttgaaaccgatatcggccgcacgaccgacccggtg cgcatgtacatgcgcgaaatgggtactgtcgagctgctgacccgcgaaggcgagatcgaa atcgccaagcgtatcgaggaaggcattcgtgaagtcatgggcgctatcgcccacttcccg ggcactgtcgactacattctcggcgaatatgatcgtgtcaccaccgagggtggccgcctg tcggacgttctcagcggttacatcgaccctgacgacaacattgccgcgccaaccgaagaa gtgccgatcccaggtgccaaggccgctgcggcgaaggaagagtccgacgacgacgaagaa gaatccgaaagcggtgacgacgaggaagaggccgagagcggcccggatccggtcgtcgca gcccaacgcttcggtgcggtatccgatcagcttcaggcaacctccaaggtcctgaagaaa aatggtcgtaaccacaaggaaagcatcgaggccttgcaggccctggctgacctgttcatg ccgatcaagctggtaccgaagcagttcgaggtactggtcgagcgtgtccgtgacgccctg aaccgtctgcgacagcaggaacgcgccatcatgcagctgtgcgtacgtgacgcccgcatg ccgcgagccgacttcctgcgcatgttcccaagcaacgaaaccgaccagacctggagcggt gacctggccaagcgcaacaccaagtgggctgccgccctgggtgaaaagaacgctgccatc gtcgcttgccagcagaagctgatcgaccttgagaccgaaaccggcctgaccgttgccgag atcaaggaaatcaaccgtcgcatgtcgatcggtgaagccaaggcccgccgcgccaagaaa gaaatggtcgaggcgaacctgcgtctggtgatttccatcgccaagaagtacaccaaccgt ggcctgcagttcctcgacctgatccaggaaggcaacatcggtctgatgaaagcggtggac aagttcgaataccgtcgcggctacaagttctcgacctatgccacctggtggatccgtcag gcgatcacccgttcgatcgccgaccaggcacgcaccatccgcattccggtgcacatgatc gagacgatcaacaagctcaaccgtatttcccgccagatgctgcaggaaatgggtcgcgaa ccgactccggaagagctgggcgagcgcatggaaatgcctgaggacaaaatccgcaaggta ctgaagatcgccaaagagccgatctccatggaaaccccgatcggtgacgacgaagattcg cacttgggcgacttcatcgaggactcgaccatgcagtccccgatcgacgtggccacggtc gaaagcctcaaggaagccacccgtgacgtgctctcgggcctgactgcacgcgaagccaag gtgctgcgcatgcgtttcggtatcgacatgaacaccgaccacaccctcgaagaggtgggc aagcagtttgacgtaacgcgtgagcggatccgtcagatcgaagcgaaggcgttgcgcaag ctgcgccacccgactcgcagcgagcacctgcgctccttcctcgacgagtga

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