Pseudomonas putida BIRD-1: PPUBIRD1_0516
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Entry
PPUBIRD1_0516 CDS
T01975
Symbol
rpoA
Name
(GenBank) RpoA
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
ppb
Pseudomonas putida BIRD-1
Pathway
ppb03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ppb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PPUBIRD1_0516 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppb03021
]
PPUBIRD1_0516 (rpoA)
03400 DNA repair and recombination proteins [BR:
ppb03400
]
PPUBIRD1_0516 (rpoA)
Enzymes [BR:
ppb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PPUBIRD1_0516 (rpoA)
Transcription machinery [BR:
ppb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PPUBIRD1_0516 (rpoA)
DNA repair and recombination proteins [BR:
ppb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PPUBIRD1_0516 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
RNA_pol_L_2
HHH_XRCC3_RpoA
AMIN-like
Motif
Other DBs
NCBI-ProteinID:
ADR58210
LinkDB
All DBs
Position
586189..587190
Genome browser
AA seq
333 aa
AA seq
DB search
MQISVNEFLTPRHIDVQVVSPTRAKITLEPLERGFGHTLGNALRRILLSSMPGCAVVEAE
IDGVLHEYSAIEGVQEDVIEILLNLKGLAIKLHGRDEVTLTLSKKGSGVVTAADIQLDHD
VEIVNPDHVIANLASNGALNMKLTVARGRGYEPADSRQTDEDESRSIGRLQLDASFSPVR
RIAYVVENARVEQRTNLDKLVIDLETNGTLDPEEAIRRAATILQQQLAAFVDLKGDSEPV
VVEQEDEIDPILLRPVDDLELTVRSANCLKAENIYYIGDLIQRTEVELLKTPNLGKKSLT
EIKDVLASRGLSLGMRLDNWPPASLKKDDKATA
NT seq
1002 nt
NT seq
+upstream
nt +downstream
nt
atgcagatttcggtaaatgagttcctgactccccgccacattgatgtgcaggtagtcagt
ccgacccgcgccaaaattacgctcgagcctctcgagcgtggtttcggccataccctgggc
aacgcgctgcgccgcatcctgttgtcctccatgcctggctgtgcagtagtcgaggccgag
atcgatggcgtactccatgagtactccgcgatcgaaggtgttcaggaagacgtaattgaa
atcctgttgaacctgaaaggtctcgctatcaaactgcatggtcgtgacgaagttacgctg
accttgtcgaaaaagggttcgggggtggttaccgctgccgatattcagctggatcacgat
gtcgagatcgtcaaccccgatcacgtaatcgcgaacctggcgtcgaacggcgctctgaac
atgaagctcactgtagctcgtggtcgtggttacgagccggccgactcccgtcaaaccgac
gaagacgaaagccgtagcattggccgtctgcagttggacgcctccttcagcccggtgcgt
cgtatcgcctatgtggtcgagaacgcccgtgttgaacagcgtaccaacctggacaaactg
gtcattgatctggaaaccaacggcaccctggatcctgaagaggctatccgccgcgctgcg
accattctgcaacagcagttggctgcgttcgtcgacctcaaaggtgacagcgagcctgtc
gtagtcgagcaggaagacgagatcgatccgatcctgctgcgtccggttgacgacctggaa
ctgactgtacgttcggccaactgcctcaaggcggagaacatctactacatcggcgacctg
attcagcgtaccgaagtagagctgttgaagactcctaacctgggtaagaagtccctgact
gaaatcaaggacgttctggcctctcgtggtctgtctctcggcatgcgcctcgacaactgg
ccgcctgcaagtcttaagaaagacgacaaggcgaccgcctga
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