Pseudomonas putida BIRD-1: PPUBIRD1_0520
Help
Entry
PPUBIRD1_0520 CDS
T01975
Symbol
uvrA
Name
(GenBank) UvrA
KO
K03701
excinuclease ABC subunit A
Organism
ppb
Pseudomonas putida BIRD-1
Pathway
ppb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ppb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PPUBIRD1_0520 (uvrA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppb03400
]
PPUBIRD1_0520 (uvrA)
DNA repair and recombination proteins [BR:
ppb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PPUBIRD1_0520 (uvrA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PPUBIRD1_0520 (uvrA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_inter
UvrA_DNA-bind
ABC_tran
SMC_N
nSTAND1
AAA_29
AAA_23
AAA_16
AAA_22
RsgA_GTPase
BCA_ABC_TP_C
AAA_33
nSTAND3
Viral_helicase1
DnaJ_CXXCXGXG
cobW
AAA_25
Zn_ribbon_8
Motif
Other DBs
NCBI-ProteinID:
ADR58214
LinkDB
All DBs
Position
complement(589932..592766)
Genome browser
AA seq
944 aa
AA seq
DB search
MDKILIRGARTHNLKNIDLTLPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAY
ARQFLSMMEKPDVDTIEGLSPAISIEQKSTSHNPRSTVGTITEIYDYLRLLYARVGTPRC
PDHDIPLEAQTISQMVDLVLERPEGSKLMLLAPVVRERKGEHLAVFDELRAQGFVRARVN
GKLYELDELPKLDKQKKHSIDVVVDRFKVRADLQQRLAESFETALKLADGIALVAPMDDE
QGEETIFSARFACPVCGHAISELEPKLFSFNNPAGACPTCDGLGVKQFFDTKRLVNTELT
LAEGAIRGWDRRNVYYFQMLGSLAAHYGFSLEEPFGELSAEHQKVILQGSGKQSVDFKYL
NDRGDIVKRSHPFEGIVPNLERRYRETESATVREELAKFLGTQPCPDCRGTRLRREARHV
WVGEKTLPAVTNMPIGEASNYFGQLTLTGRRGEIAAKILKEICERLQFLVNVGLDYLTLD
RSADTLSGGEAQRIRLASQIGAGLVGVMYILDEPSIGLHQRDNDRLLATLNHLRDLGNTV
IVVEHDEDAIRLADYVVDIGPGAGVHGGQIVAEGSPQEVMDHPDSLTGKYLSGRKKIVVP
AKRTPRNKKLQLKLKGARGNNLQNVDLEVPIGLLTCVTGVSGSGKSTLINNTLYPLAATA
LNGASSLEAAPHSSMDGLQHLDKVVDIDQSPIGRTPRSNPATYTGIFTPIRELFSGVPES
RSRGYGPGRFSFNVKGGRCEACQGDGLIKVEMHFLPDIYVPCDVCKSKRYNRETLEIKYK
GKNIHEVLEMTIEDAREFFDAVPALARKLQTLMDVGLSYIKLGQSATTLSGGEAQRVKLS
RELSKRDTGKTLYILDEPTTGLHFADIQQLLDVLHRLRDHGNTVVVIEHNLDVIKTADWL
VDLGPEGGSKGGQIIACGTPEELSEMKQSYTGHYLKPLLERDRA
NT seq
2835 nt
NT seq
+upstream
nt +downstream
nt
gtggacaagatccttattcgtggggcacgtacccacaacctgaagaacatcgacctgacc
ctgccccgggacaagttgatcgtgatcaccggtttgtccggttccggcaagtcgtccctg
gcgttcgataccttgtacgccgaaggccagcgccgctacgtggaatcgctgtcggcctac
gcccggcagttcctgtcgatgatggaaaagcccgacgtcgacaccatcgaaggcctgtcg
ccagcgatttcgatcgagcagaagtcgacctcgcacaacccgcgctccacggtcggcacc
atcaccgaaatctacgattatctgcgcctgctatacgcccgcgtcggtactccacgctgc
ccggaccacgatatcccgctggaggcgcaaacgatcagccagatggtcgacctggtgctg
gagcgcccggaaggcagcaagctgatgctgcttgcgccggtagtgcgcgagcgcaagggc
gagcacctggcggtgtttgacgagcttcgcgcccagggcttcgtgcgggccagggtcaac
ggcaagctctacgagcttgatgagttgcccaagctggacaagcagaagaagcacagcatc
gatgtggtggtggaccgattcaaagtccgcgccgacctgcaacagcgcctggccgaatcg
ttcgaaaccgcgttgaagctggccgatggtattgccctggtggcaccgatggacgacgaa
caaggcgaagagacgatcttctccgcgcgcttcgcctgtccggtgtgcggccacgcgatc
agcgagctggaaccgaagctgttttccttcaacaacccggctggcgcctgcccgacctgc
gacggcctgggggtcaagcagttcttcgacaccaaacgcctggtcaacaccgaactgacc
ttggccgaaggcgcgatccgcggctgggaccggcgtaacgtgtactacttccagatgctc
ggttcgttggctgcgcactacggcttcagcctggaggagcctttcggcgagctgtcagcc
gaacaccagaaagtgatcctgcagggcagcggcaagcagagtgtcgatttcaagtacctc
aacgaccgaggcgacatcgtcaagcgatcgcacccgttcgaaggcattgtgccaaacctt
gagcgtcgctaccgcgaaaccgaatcggccactgtgcgtgaagaactggccaaattcctt
ggcacgcaaccgtgcccggattgccggggtacgcgcctgcgccgcgaggcgcgccatgtg
tgggtgggcgagaagaccctgccggctgtaaccaatatgccgatcggtgaagccagcaac
tactttggtcaactgacccttactggccgacgtggcgaaatcgcggcaaaaatcctcaag
gaaatctgcgaacgacttcagtttctggtcaatgtcggcctcgactacctgaccctggat
cgtagcgccgacaccctgtccggtggcgaagcgcaacgtatccgactcgccagccagatc
ggtgccggtctggtgggggtgatgtacatcctcgatgaaccgtccatcggccttcatcaa
cgcgacaacgaccgcctgttggccacacttaaccatttgcgcgacctgggcaacacggtg
atcgtggtggaacacgacgaggacgccattcggctggccgactacgtggtcgatatcggc
ccgggcgccggtgttcacggtgggcagatcgtcgccgagggctcgccccaggaggtcatg
gaccatcccgattcgctgactggcaagtacctgtccgggcgcaagaagatcgtcgtgccg
gccaagcgcacaccgcgcaacaagaagctgcagctcaagctcaagggcgcacgtggcaac
aacctgcagaacgtcgacctggaagtaccgatcggcctgctgacctgcgtgaccggtgta
tccggctcgggtaaatcgacgctgatcaacaataccctttaccccttggccgccaccgcc
ctcaatggcgcaagcagcctggaagccgcaccgcacagcagcatggacggcctgcagcac
ctggacaaggtggtggatatcgaccagagcccgatcggccgcacgccgcgctccaacccg
gcgacctacaccggcatcttcacgccgatccgcgagctgttctccggtgtcccggagtca
cgctcgcgtggttatggcccggggcgtttctcgttcaacgtcaagggtggccgttgcgag
gcctgccagggcgatggcctgatcaaggtggaaatgcacttcctgccggacatctacgtg
ccgtgtgacgtgtgcaagagcaagcgctacaaccgcgaaaccttggagatcaagtacaag
ggcaagaacatccacgaggtgctggaaatgaccatcgaggatgcccgcgagttcttcgat
gcggtgccggcgctggcgcgcaagctgcaaacgttgatggatgtgggcctctcgtacatc
aaactggggcaatcagcgaccacgttgtccggcggtgaggcgcagcgggtaaagctgtcg
cgcgaactgtccaagcgcgataccggcaagaccttgtacatcctcgacgaacctaccacc
ggtctgcactttgccgatatccagcaactgctggacgtgttgcatcgcctgcgcgaccac
ggcaacaccgtggtggtgatcgagcataacctggatgtgatcaagaccgccgactggctg
gttgatctggggcctgagggcggctccaagggtgggcagatcattgcctgcggtacacca
gaagagctgagcgagatgaagcagtcatataccggccattacctgaaaccattgctggag
cgggatagggcctga
DBGET
integrated database retrieval system
