Pseudomonas putida BIRD-1: PPUBIRD1_0595
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Entry
PPUBIRD1_0595 CDS
T01975
Name
(GenBank) GAF modulated sigma54 specific transcriptional regulator, Fis family
KO
K21405
sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
Organism
ppb
Pseudomonas putida BIRD-1
Brite
KEGG Orthology (KO) [BR:
ppb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ppb03000
]
PPUBIRD1_0595
Transcription factors [BR:
ppb03000
]
Prokaryotic type
Helix-turn-helix
Other families
PPUBIRD1_0595
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
AAA_lid_14
HTH_8
GAF
PAS_9
AAA_5
PAS_4
HTH_AraC
HTH_50
PAS_8
HTH_7
HTH_23
HTH_22
HTH_AsnC-type
AAA_2
RWP-RK
HTH_17
HTH_30
HTH_26
Mga
HTH_IclR
HTH_10
HTH_28
AAA
PAS_7
HTH_3
HTH_11
ANT
MCM
HTH_Tnp_1_2
Motif
Other DBs
NCBI-ProteinID:
ADR58286
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All DBs
Position
669133..671145
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AA seq
670 aa
AA seq
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MQSNHFTRHARQVHSVAHGGAGEGGSDPSIARSWLRCLEDYHLDPTVIEAPVVLEHGRLL
ESRERLHQVLQIADHEMNSLHQQLSGAGHAVLLTDARGVILNCVSAPAERRSFERAGLWL
GADWSEAREGTNGIGTCLVERQALTIHQNEHFRGRHTGLTCSASPVFDPHGDLLAVLDVS
SARPDVSRQSQFHTMALVNLSAKMIESCYFLRHFEQQWLLRFHLQAESVGLFSEGLLAFD
GDGRICAANQSALNLLGTVRGGVLGKPLECFFACSHDEMFSRATPGGSAVWPLRTLDGRQ
VFASLRGQARAPVWSVPAAHPRPAGEVEPLVCLLDPALQNDFRRSVRVFERNVPLLLRGE
TGCGKEAFAQVVHQASERRGKPFVAINCASIPESLIESELFGYRGGSFTGARKEGMRGKL
LQADGGTLLLDEIGDMPLALQTRLLRVLEERQVVPIGGEPQAVDVRIVSATHRDLLERVE
QGSFREDLYYRLNGLEVALPAVRERSDKAQLLDFLLRQETQGQWIDIEPRARQALLAFNW
PGNVRQMRNVLRTLVALCEDARITFADLPAVIRTSPPPVGAGEPTMSDQAIEGEGVALVR
GQARSHRSGGAAEIEGESVGTEVLLDAERQALKEVLEAKHWHLTRVAEHLGISRNTLYRK
LRKHGITRGD
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atgcagagcaatcacttcacgcgccatgcccggcaggttcatagcgttgcccatggtggg
gccggggagggcggcagtgacccgtccatcgcccgctcctggctgcgctgcctggaggat
taccacctcgacccgacggtgatcgaagcgccggtggtgcttgagcatgggcgcctgctg
gaaagccgcgagcgcctgcatcaggtgctgcaaattgccgaccatgaaatgaacagcctg
caccagcagctttccggcgcaggccacgcggtgctgctgaccgacgcccgcggggtgatc
ctcaactgcgtcagtgcccccgccgagcggcgtagcttcgagcgtgccgggctgtggttg
ggcgctgactggagcgaggcgcgcgagggcaccaatggcatcggcacctgcctggtcgag
cgccaggcgctgaccatccatcagaacgagcacttccgtggccgtcacaccgggctgacc
tgctcggccagcccggtgttcgacccgcatggcgacctgctggcggtactcgacgtgtcc
tctgcgcgccccgatgtatcgcggcaaagccagttccacaccatggcgttggtcaacctt
tcggcgaagatgatcgaaagctgctatttcctgcgccatttcgagcagcaatggttattg
cgttttcacctgcaagccgagtcggtcggcctgttcagcgaaggtttgctggcgttcgac
ggcgatgggcgcatttgcgctgccaaccaaagcgcactgaacctgctgggcacggtacgg
ggcggcgtgctgggcaaaccgttggagtgctttttcgcgtgcagccatgacgaaatgttc
agccgtgccacgcccggcggcagtgccgtctggccgctgcgtaccctggacggtcgccag
gtgttcgctagcctgcgggggcaggcccgggcgccggtgtggtcggtgccggccgcccac
ccgcggcccgcaggtgaagtggagccgctggtctgtctgcttgaccctgcgttgcaaaat
gattttcgccgcagcgtgcgggtgttcgagcgcaatgtgccattgctgctgcgcggcgag
actggctgtggcaaggaggccttcgcccaggttgtgcatcaggccagtgagcggcgcggc
aagccgttcgtcgccatcaactgcgcgtctatcccggaaagcctgatcgagagtgagctg
ttcgggtaccgcggcggcagttttaccggcgcgcgcaaggagggtatgcgtggcaagctg
ttgcaggccgatggcggcaccttgctgctggacgagatcggcgatatgccgcttgccctg
caaacccgactgctgcgggtgctggaggagcgccaggtggtgccgatcgggggagagcca
caggcggtggacgtgcgcatcgtcagtgctacgcaccgtgacctgctggaacgggttgaa
cagggcagtttccgcgaggacctgtattaccgcctcaatggcctggaggtcgcgctgccg
gcggtacgcgaacgcagtgacaaggcgcagttgctggactttctgctacgtcaggagacg
caggggcaatggatagacatcgagcccagggcgcggcaggcgctgctcgcatttaactgg
ccagggaacgtgcggcagatgcgcaatgtgctgcgtaccctggtggcgctttgcgaagat
gcccgcattacctttgcggacctccccgccgtcatccgcaccagcccacctcccgtgggg
gcgggcgagcccacgatgtccgaccaggcaatagagggcgagggcgttgccctcgttcgc
gggcaagcccgctcccacaggtccggcggtgccgcagagattgagggtgagtctgtaggg
accgaggttctgctcgacgcggagcggcaagcgctgaaggaggtcctggaggcaaaacac
tggcatctcacccgcgtcgccgagcacttgggcatcagccgcaataccttgtatcgaaaa
ctgcgcaaacacggcattaccagaggcgactga
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