Pseudomonas putida BIRD-1: PPUBIRD1_0746
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Entry
PPUBIRD1_0746 CDS
T01975
Name
(GenBank) ECF subfamily RNA polymerase sigma factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
ppb
Pseudomonas putida BIRD-1
Pathway
ppb02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
ppb00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
PPUBIRD1_0746
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppb03021
]
PPUBIRD1_0746
Transcription machinery [BR:
ppb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
PPUBIRD1_0746
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4_2
Sigma70_ECF
Sigma70_r4
PhyR_sigma-like
HTH_23
HTH_DeoR
HTH_11
HTH_17
HTH_3
HTH_7
HTH_31
HTH_38
HTH_29
HTH_28
HTH_22
HTH_IclR
HTH_6
HTH_20
HTH_Tnp_ISL3
HTH_40
HTH_24
HTH_50
SpoIIID
Motif
Other DBs
NCBI-ProteinID:
ADR58432
LinkDB
All DBs
Position
complement(846365..846880)
Genome browser
AA seq
171 aa
AA seq
DB search
MQINDTLKPNEVALLYQSHHAWLRGWLRSRVGCSEHAADLAQDTFVRLLRARQVSPLKEP
RAYLSSIARGLMIDQFRRRALERAYQESLAHLPEAEVPSEEDKLVLLDSLERLDRALQQL
KPRVRQAFLLAQLDGLSIVQVAQRLGVSRATVERDLAKALGACYRLRYADA
NT seq
516 nt
NT seq
+upstream
nt +downstream
nt
atgcagatcaacgacacgctcaagcccaacgaggtcgctctgctctaccagtctcaccat
gcctggttgcgtggctggttacgcagccgggtcggttgcagtgaacatgccgcagacctg
gcccaggataccttcgtgcggttgttgcgcgcccgccaggtgtcaccgctcaaagaaccc
cgtgcctacctcagcagcatcgcccgtggcttgatgatcgaccagttccgacgccgcgcg
ctggagcgggcctatcaggagagcctggctcacctgcccgaagcagaagtgcccagcgaa
gaggataagcttgtcctcctcgatagcctggaacgcctcgaccgcgccttgcagcagttg
aaaccgcgcgtccgccaagcgttcctgctggcccagctagacggtttgagcatcgtgcag
gttgcccaacgtctaggagtgtccagggccactgttgagcgcgacctggccaaagccttg
ggcgcctgctaccggttgcgctatgccgatgcctga
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