Pseudomonas putida BIRD-1: PPUBIRD1_1949
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Entry
PPUBIRD1_1949 CDS
T01975
Name
(GenBank) DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
ppb
Pseudomonas putida BIRD-1
Brite
KEGG Orthology (KO) [BR:
ppb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppb03032
]
PPUBIRD1_1949
03400 DNA repair and recombination proteins [BR:
ppb03400
]
PPUBIRD1_1949
Enzymes [BR:
ppb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
PPUBIRD1_1949
DNA replication proteins [BR:
ppb03032
]
Prokaryotic type
DNA Topoisomerases
PPUBIRD1_1949
DNA repair and recombination proteins [BR:
ppb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
PPUBIRD1_1949
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Metal_resist
Motif
Other DBs
NCBI-ProteinID:
ADR59597
LinkDB
All DBs
Position
complement(2212071..2213093)
Genome browser
AA seq
340 aa
AA seq
DB search
MLDCPLPRTLHYVDDSQPGLTRRRWRDRFIYLDADGQRVRDSETLARIAALVIPPAYTDV
WICADPQGHLQATGRDARGRKQYRYHAQWRELRDQHKYGRMLAFAQALPKLRTQLEAHLA
RPGLDREKVMALVVSLLDHTLIRIGNQRYLRDNRSYGLTTLRNRHVQIKGSSIRFQFRGK
RGVEHNVTLNDRRLANLLKRCMELPGQALFQYLDEDGQRHSVGSTEVNQFLQQLTGADFT
AKDYRTWAGSSLALNLLKPLAWEPESEAKRQVAAIVRQVATRLGNTPAVCRRCYIHPAVL
EHYTLGRLANLPKNRVRKGLDPEEVALLLFLQALEEQEAH
NT seq
1023 nt
NT seq
+upstream
nt +downstream
nt
atgcttgactgccccctgccgcgcaccctgcactacgttgacgacagtcagccgggcctg
acccgtcggcgctggcgcgaccgtttcatctacctggatgccgatggccaacgagtacgc
gacagcgaaaccctcgcacgcatcgccgcactggtgatccccccggcctacacggatgtg
tggatctgcgccgatccgcaaggccacctgcaagccaccggccgtgatgcccgtggccgc
aagcagtaccgctaccacgcgcagtggcgcgaactgcgcgaccagcacaaatacgggcgc
atgcttgcgttcgcccaagccttgccaaagctgcgcacacagctggaagcccacttggcg
cggccagggctggaccgggaaaaggtcatggcgctggtggtcagcctgctggaccacacc
ctgatccgcattggtaaccagcgctacctgcgcgataaccggtcgtacggattgaccacc
ctgcgcaatcgccatgtacagatcaaaggcagcagcattcgctttcaattccgcggcaag
cgcggcgtcgaacacaacgtcaccctcaacgaccggcgcttggccaacctgctcaaacgc
tgcatggaactgcctgggcaggcactgtttcagtacctggatgaagacggccagcgccat
agtgtcggctccaccgaggtcaatcagtttctgcagcagttgaccggcgccgacttcact
gccaaggactatcgcacctgggccggcagcagcctggcattgaacctgctgaagcccttg
gcctgggagccggagagtgaagccaaacgtcaggtcgcagcaatagtccgccaggtagcc
acgcgcctgggcaatacgccggcagtgtgccggcgctgctacatccacccggcagtcctg
gagcactataccttggggcgccttgccaatttgccgaaaaaccgtgtgcgcaaaggcctg
gacccggaggaagtggccttgttgttgtttcttcaggcactcgaggaacaggaggcccat
tga
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