Pseudomonas putida BIRD-1: PPUBIRD1_2630
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Entry
PPUBIRD1_2630 CDS
T01975
Name
(GenBank) UvrABC system protein A
KO
K03701
excinuclease ABC subunit A
Organism
ppb
Pseudomonas putida BIRD-1
Pathway
ppb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ppb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PPUBIRD1_2630
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppb03400
]
PPUBIRD1_2630
DNA repair and recombination proteins [BR:
ppb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PPUBIRD1_2630
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PPUBIRD1_2630
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
UvrA_DNA-bind
AAA_21
nSTAND1
SMC_N
AAA_16
DnaJ_CXXCXGXG
AAA_29
AAA_25
RsgA_GTPase
Anti-TRAP
Motif
Other DBs
NCBI-ProteinID:
ADR60255
LinkDB
All DBs
Position
2986864..2989380
Genome browser
AA seq
838 aa
AA seq
DB search
MPPSPTTPSGFIRVRGAREHNLKNIDVDIPRDALVVFTGVSGSGKSSLAFSTLYAEAQRR
YFESVAPYARRLIDQVGVPDVDAIDGLPPAVALQQQRGTPSARSSVGSVTTLSSSIRMLY
SRAGHYPAGQAMLYAEDFSPNTPQGACPQCHGLGRVYEVTEATMVPDPSLTIRERAVAAW
PMAWQGQNLRDILVTLGYDVDIPWRDLPQAQRDWILFTEETPTAPVYAGLTPAQTREALK
RKLEPSYQGTFMGARRYVLHTFMHSQSAQMRKRVAQYMRPSPCPLCQGKRLKREALGVTF
AGLDIAELSHLSLQALAEVFRKVAAADYLTRQQDELTLEKRLAAQRIANELLERIDTLLD
LGLGYLALERSTPTLSSGELQRLRLATQLNSQLFGVVYVLDEPSAGLHPADSEALFEALQ
RLKQAGNSVYVVEHDLDTMRRADWLVDVGPAAGEHGGTILYSGPPAGLAEVQQSCTRTYL
FDAPVQATRAPRQPRDWLKLEGITRNNLDNLSAAFPLGCFTAVTGISGSGKSSLVSQALL
ELVGAHLGHAEQRSEPEAQSLEDEPEQTSSGHLSAGLGSIKRLVQVDQKPIGRTPRSNLA
TYTGLFDHVRKRFAATEQAKAQGFDAGRFSFNVAKGRCANCEGEGFVSVELLFMPSVYAP
CPTCQGARYNPETLAVSWQGMNIAQVLQLTVDQALQVFAEQPPARRCLQVLQDIGLGYLR
LGQPATELSGGEAQRIKLATELQRMARGATLYVLDEPTNGLHPQDIDRLLVQLNRLVESG
HSVVVVEHDMRVVAQSDWVIDIGPGAGDSGGKVVVSGTPQVVAGCKASRTAEFLAKAL
NT seq
2517 nt
NT seq
+upstream
nt +downstream
nt
atgcctccaagcccgaccaccccaagcggtttcatccgcgtccgtggcgcccgcgagcac
aacctgaagaacattgatgtcgatatcccccgcgacgccttggtggtgttcaccggcgtg
tctggctcgggcaagtcttcgctggcattctccacgctgtatgccgaagcccagcgccgc
tatttcgaatcggtcgcgccctatgcccggcgcctgatcgaccaggttggcgtgccggat
gtggatgccatcgatggcctgccgccggcggtggccctgcagcagcaacgcggcacgccg
agtgcacgctcctcggtgggtagcgtgaccaccttgtccagttcgatccgaatgctttac
tcccgcgcaggccattacccggccgggcaagcgatgctgtacgccgaagacttttctccg
aacacgccccagggcgcttgcccgcagtgccatggcctgggccgtgtctacgaggtgacc
gaagcgaccatggttcccgacccgtcgctgaccatccgtgagcgtgcggtggcggcgtgg
ccaatggcgtggcaagggcaaaacctgcgcgacatcctggtcacgctgggctatgacgtc
gatatcccttggcgcgacctgcctcaggcgcagcgcgactggatcctgttcactgaagag
acgcccaccgcccccgtgtatgccggcctgaccccggcgcagacccgcgaagcgctcaag
cgcaagctggagcccagctatcaaggcacgttcatgggtgcccggcgttacgtgctgcat
accttcatgcactcgcagagcgcgcagatgcgcaagcgtgtggcccagtacatgcgcccc
agcccctgcccgctgtgccagggcaaacgcctgaagcgcgaagcgctgggcgtgaccttc
gccgggctggacatcgccgaactgtcgcacctgtcgttgcaggcgctggccgaggtgttc
cgcaaggtggcggcagccgactacctgacccggcagcaggacgagctgacactggaaaaa
cgcctggcggcccaacgcatcgccaacgagctgctcgaacgcattgatacgctgcttgac
ctcggcctcggttacctggccctggagcgcagcaccccgaccttgtcttctggggaactg
caacgcctgcgcctggccacccagctgaattcgcagctgtttggcgtggtttacgtactc
gacgagccgtcggccggcttgcacccggccgacagtgaagcgctgttcgaagccctgcag
cgcctgaaacaggctggcaactcggtgtatgtggtggagcacgacctggacaccatgcgc
cgcgccgactggctggtggatgtagggccagctgccggcgaacacggcggcaccatcctc
tacagcgggccgcctgccggcctggctgaggtgcaacagtcatgcacccgcacctacctg
ttcgatgcaccggtacaggccacacgcgccccccgccagccccgcgactggctgaagctt
gaaggcatcacgcgcaataacctcgataacctgagcgctgcatttccgctgggctgcttt
accgccgttaccggtatttccggctcgggcaaatccagcctggtcagccaggccctgctg
gaactggtgggggcacacctgggccatgccgagcaacgtagcgagcccgaagcgcagagc
ctggaagacgaacctgaacagaccagcagcggccacctaagcgccgggcttggcagcatc
aagcggttggtgcaggttgaccagaagccgatcggccgtacgccgcgctccaacctggcc
acctacacaggcctgtttgaccacgtgcgcaaacgcttcgcggctaccgagcaggccaag
gcacagggcttcgacgccgggcgcttttccttcaacgttgccaagggccggtgcgccaac
tgcgagggagagggtttcgtcagcgtcgagttgctgttcatgcccagcgtgtacgcaccc
tgcccgacctgccagggtgcccgctacaaccccgaaaccctggcggtgagctggcaaggc
atgaacatcgcgcaagtgctgcagttgaccgtcgaccaggccctgcaggtttttgccgag
caaccgcctgcccgccgttgcctgcaggtgctgcaggatatcggcctgggctacttgcgt
ctgggccagcctgctaccgagctgtccggtggtgaagcgcagcggatcaagctggcgacc
gaactgcagcgcatggcccgcggggcgaccctgtatgtgctggatgagcccaccaacggc
ttgcatccgcaggacatcgaccggctgctggtacagttgaaccgcctggtagaaagcggg
catagcgtggtggtggtcgaacacgacatgcgagtggtggcgcagagtgactgggtgatc
gatattggcccgggggccggggattccgggggcaaggtggtggtcagcggcaccccgcag
gtggtggccgggtgtaaggcaagccgcacggccgagtttctggccaaagcgttgtag
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