Pseudomonas putida BIRD-1: PPUBIRD1_2895
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Entry
PPUBIRD1_2895 CDS
T01975
Name
(GenBank) DEAD_2 domain protein
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
ppb
Pseudomonas putida BIRD-1
Pathway
ppb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ppb00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
PPUBIRD1_2895
09124 Replication and repair
03420 Nucleotide excision repair
PPUBIRD1_2895
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppb03021
]
PPUBIRD1_2895
03036 Chromosome and associated proteins [BR:
ppb03036
]
PPUBIRD1_2895
03400 DNA repair and recombination proteins [BR:
ppb03400
]
PPUBIRD1_2895
Enzymes [BR:
ppb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
PPUBIRD1_2895
Transcription machinery [BR:
ppb03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
PPUBIRD1_2895
Chromosome and associated proteins [BR:
ppb03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
PPUBIRD1_2895
DNA repair and recombination proteins [BR:
ppb03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
PPUBIRD1_2895
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
DUF7711
Helicase_C
Motif
Other DBs
NCBI-ProteinID:
ADR60507
LinkDB
All DBs
Position
complement(3250606..3252867)
Genome browser
AA seq
753 aa
AA seq
DB search
MSYSVAVRALCEFSAKVGDLDLRFTPSPTAQEGIEGHQRVVARRAAGYESEIALEGQFET
LRVRGRADGYDPGSNRLEEIKTHRGDLARQPANHRQLHWAQAKVYGWLMCQARQLPAIEV
ALVYLDVDSDSQTLFTEHCSAAELQAFFETQCQRFLGWARWQQRRLAERDQGLLALSFPY
PQFRKGQRQLAETLYKAVSTGRCLMAQASTGIGKTLGTLFPLLKAMVPQQLDKLFFLTAK
TPGRALALDAMRQITDATPQPALRTLELIARDKACEYPDKACHGESCPLAAGFYDRLPAA
REAAAALPLLDRTNLREVALAHQVCPYYLGQEMARWADVLVADYNYYFDAHALLFGLTQL
NQWRVAVLVDEAHNLVERGRGMYSASLDQGQLLALRQSKPPGLVSALDRLNRQWNALYKE
QRAPYQASESLPEGLLRALQQCVGVIQEQMNQAPTHIDPQVLQFYYQALQFCRVAELFDE
HFLFDISQRQGPRKRRLATLCLRNVTPARLLAPRMQAARSVTLFSATLSPRHFYSDLLGM
PADTAWLDVAAPFRAEQLEVRIASQVSTRYQQRQASLAPIVDLIARQYERMPGNYLAFFS
SFEYLQQVAGLLAEQHGQIPLWSQEPGMDEAARQAFLDRFVADGRGVGFAVLGGAFGEGV
DLPGTRLIGAFVATLGLPQVNPVNEQFKQRLGRQFGAGFDYAYLYPGVRKVIQAAGRVIR
GDQDRGVLVLIDERFAEPRVQQMFPGWWAAAIV
NT seq
2262 nt
NT seq
+upstream
nt +downstream
nt
ttgagctacagcgtagcggtgcgcgccttgtgtgagttcagcgccaaggtcggcgacctg
gacctgcgcttcacgccatcgcccactgcccaggagggtatcgaagggcatcagcgggtg
gtggcacggcgggctgccggctacgagtcggaaatcgcccttgaaggccagttcgaaacc
ctcagggtgcggggtcgcgccgatggctatgaccctggcagcaatcgcctggaagagatc
aagacgcaccgtggtgacctggcgcgtcaaccggccaatcaccgtcagttgcactgggca
caggccaaggtctatggctggttgatgtgccaggcacgacaactgcccgccatcgaggtg
gcgctggtgtacctcgacgtggacagcgatagccagacgctgttcacggagcactgttcg
gctgccgagttgcaggccttctttgaaacccagtgccagcgctttctgggctgggcccga
tggcagcaacgacgcttggccgaacgtgaccaaggcctgctggcgctgagtttcccctac
ccacagttccgaaagggccagcggcagttggctgaaaccttgtacaaggcggtgagcacc
ggccgttgcctgatggcccaggccagcaccggcattggcaaaaccctcggtaccttgttc
ccgctgctcaaggccatggtgccgcagcagctggacaagctgttttttctcaccgccaag
acaccaggccgggcactcgccctggatgccatgcgccagatcaccgatgccacgccgcaa
cctgccctgcgcacattggagttgatcgcccgcgacaaagcctgtgagtacccggacaag
gcctgtcatggtgagtcctgccccttggccgcaggtttctacgaccgtttgccggctgcg
cgcgaggctgcagcagcactgccgttgctcgaccgcacaaacctgcgtgaagtggctttg
gcgcaccaagtgtgcccgtactacctgggccaggagatggcacgctgggccgacgtgctg
gtcgccgactataactactacttcgatgcgcatgctttgctgttcggcctgacccagctc
aaccagtggcgagtggcagtactggtggacgaagcgcataacctggtcgagcgtgggcgc
ggcatgtacagcgccagccttgaccagggccagctgctggcgttgcgacagagcaaaccg
cctgggctggtcagtgcgctggaccgcctgaacaggcagtggaacgcgctgtataaagag
cagcgtgcgccgtaccaggccagcgagtcgttgcccgaaggcctactgcgcgccctgcag
cagtgcgtcggggtgattcaggaacagatgaaccaggcccccacgcacatcgacccccag
gtgttgcagttctactatcaggccttgcagttctgccgggttgccgagctgttcgacgag
cactttctgttcgacatcagccagcgccagggcccgcgcaagcggcggctggccacgctg
tgcctgcgcaatgtcaccccggcgcggctgctggcaccacgcatgcaggcggcgcgcagt
gtgacgctgttttccgccacgttgagcccacggcacttctacagcgacctgctgggcatg
ccagccgatactgcctggctggacgtggccgcaccgttccgtgccgaacagctggaggtg
cgcattgccagccaggtgtccacccgttaccagcagcgccaagcctccctggcgccgatc
gttgacctgattgcccggcagtatgagcgcatgccgggtaactacctggcgttcttcagc
agcttcgaatacctgcaacaggtggcagggctgttggccgagcagcatgggcagattccg
ctgtggtcacaggagccgggcatggacgaggcagcccgccaggcatttctcgatcgcttt
gtcgccgatggccgaggtgtgggctttgccgtattgggcggcgctttcggcgaaggggtg
gatttgcccggcacgcggctgattggcgcgtttgtcgctaccctggggctgcctcaggtc
aacccggtcaacgagcagttcaaacagcgcctggggcggcaatttggcgcgggtttcgat
tacgcgtacctctacccgggcgtgcgcaaggtgatccaggcggcgggccgggttattcgg
ggtgatcaggaccgtggtgtactggtgctgattgacgaacgcttcgccgagccgcgggtg
cagcagatgtttccagggtggtgggcggcggctattgtctag
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integrated database retrieval system
