Pseudomonas putida BIRD-1: PPUBIRD1_2965
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Entry
PPUBIRD1_2965 CDS
T01975
Name
(GenBank) Exodeoxyribonuclease III
KO
K01142
exodeoxyribonuclease III [EC:
3.1.11.2
]
Organism
ppb
Pseudomonas putida BIRD-1
Pathway
ppb03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ppb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
PPUBIRD1_2965
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppb03400
]
PPUBIRD1_2965
Enzymes [BR:
ppb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
PPUBIRD1_2965
DNA repair and recombination proteins [BR:
ppb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
PPUBIRD1_2965
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
Motif
Other DBs
NCBI-ProteinID:
ADR60577
LinkDB
All DBs
Position
complement(3321540..3322337)
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AA seq
265 aa
AA seq
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MKALKIATFNINGIRSRLPALLAWLEREQPDIACLQELKAADQQFPRAELEAAGYGSLHH
GQPSWNGVAILVRGSDPLEVRRGLPGLEEDSQSRYLEAAAHGVLVACLYLPNGNPQPGPK
FDYKLHWFECLIQHARSLYESGHPTLLAGDFNVVPTDMDIYNPRSWLKDALLQPESRACY
QRLLDQGWLDAIRHLYPDERVYTFWDYFRNHWARNAGLRIDHLLLNHELAPYLKRAGVDA
WVRNEAKASDHAPVWIELGTRRARS
NT seq
798 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcgctgaagattgccaccttcaacatcaatggcatccgcagccgtttgccggcg
ctgctggcctggctggagcgggagcagcccgacattgcctgcctgcaggaactgaaggcg
gccgatcagcagttccctcgcgcggagctggaggcagcaggctatggcagccttcatcat
gggcaaccgtcatggaacggcgtggccattctggtgcggggcagcgatccgctcgaggtt
cgccgcggcttgcccggcctggaggaggacagccagagccgctatctggaagctgcggca
cacggggtgttggtcgcttgcctctacctgccgaacggaaacccgcagcccgggcccaag
ttcgattacaagctgcactggttcgaatgcctgatccagcatgcgcgcagcctctatgaa
agtggccaccccacgctgctggcaggggatttcaatgtcgtgcccaccgacatggacatc
tataacccgcgttcctggctgaaggacgcactgctgcagcctgagtcgcgagcgtgttac
caacgactgcttgaccagggctggctcgatgccatacgccatctgtacccggacgagcgt
gtctacaccttctgggactatttccgtaaccactgggcccgcaatgccgggttgcgaatc
gatcacctgttgctcaaccacgagcttgcgccttatctgaaacgggcgggtgtcgatgca
tgggtgcgcaacgaggccaaggccagcgaccatgcgcccgtctggatcgagctgggtacg
cgtcgtgctcggtcatag
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