Pseudomonas putida BIRD-1: PPUBIRD1_3067
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Entry
PPUBIRD1_3067 CDS
T01975
Name
(GenBank) Hypothetical protein, conserved
KO
K11900
type VI secretion system protein ImpC
Organism
ppb
Pseudomonas putida BIRD-1
Pathway
ppb02025
Biofilm formation - Pseudomonas aeruginosa
Brite
KEGG Orthology (KO) [BR:
ppb00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02025 Biofilm formation - Pseudomonas aeruginosa
PPUBIRD1_3067
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02044 Secretion system [BR:
ppb02044
]
PPUBIRD1_3067
Secretion system [BR:
ppb02044
]
Type VI secretion system
Imp/Vas secretion system core components
PPUBIRD1_3067
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VipB
Motif
Other DBs
NCBI-ProteinID:
ADR60675
LinkDB
All DBs
Position
3441776..3443224
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AA seq
482 aa
AA seq
DB search
MPKPSSTAITTDATADTLSNATLLDQIMAETKLVPAQEGYQIARQGVSAFITEILKSNDP
DQLINKHRADQMIAEIDRMLGKQMDAILHQPEFQQLESSWRSLKLLVDRTDFRENIKLEV
LHVTKEDLLDDFENAADITCSGIYKHVYTAGYGQFGGEPVAAMVGNYNFGPSSPDIKLLS
YMASVGAMSHAPFLAAPAPEFFNLNSFEELPNLKEIKDLFAGPRHAKWRAFRESEDARHV
ALTGPRFMLRSAYHPQEQPIESFNYNEDIAGQHDNYLWGNSAFLLASCINDSFARYRWCP
NIIGPQSGGAVEDLPVHLYESLGQLQAKIPTEVLISDRKEFELAEEGFIALTMRKDSDNA
AFFSANSVQKPKHFPKTPEGLQAQTNYKLGTCPARAPAGCGPTPARTPPRKCGSATARTC
GPTPSPPVSPVRQPCANGTCASWTWPSWLAATRRRPPSPMCCQSVPCKPGSKTSSQPSGA
CR
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgcccaagccaagcagcaccgccatcaccacagacgcaacggccgacacattgagcaat
gccaccttgctcgaccagatcatggcagaaaccaagctggtgcctgctcaggagggctac
cagattgccaggcagggcgtatctgccttcatcaccgaaatcctcaagagcaatgacccg
gatcaactgatcaacaagcaccgggccgaccagatgattgccgagatcgaccgaatgctc
ggcaaacagatggatgccattctgcatcagcctgagttccagcagcttgaatcatcatgg
cgcagcctgaaacttctggtcgaccgcacggacttcagggagaacatcaagcttgaagtc
ttgcatgtcactaaagaggacctgctcgacgacttcgaaaatgctgctgacattacctgc
agcggtatctacaagcatgtttacaccgcgggttatggccaattcgggggagagccggtt
gcggccatggtaggcaactacaacttcggcccctcttcccctgacatcaagttgctaagt
tacatggcctccgttggcgccatgtcccatgccccttttcttgctgcaccggcccccgaa
ttcttcaatttgaacagcttcgaggagctgcctaacctcaaggaaataaaagacctcttc
gccggccctcggcatgccaagtggcgcgcttttcgtgaaagcgaagacgcccgccacgtc
gccctgaccgggccgcgcttcatgcttcgctccgcttaccacccgcaggaacaaccgatc
gagagcttcaactacaacgaagacatcgccgggcagcacgacaactacctatggggcaat
tctgcttttctgttagccagttgcatcaacgacagcttcgcccgctaccgctggtgcccg
aacatcatcggcccccaatcgggcggtgctgtcgaagacttgccggtccatctgtacgaa
tccctgggccagttgcaggccaagattcctaccgaggtgctgatatccgaccgcaaggaa
ttcgaactggctgaagagggcttcatcgccctgaccatgcgcaaagacagcgacaacgcc
gcgtttttctccgccaactcggtacaaaagcccaagcacttcccgaaaacccctgagggg
ctgcaggcccagaccaactacaagctgggtacctgtccggccagagcaccggctgggtgt
gggccgacacctgccaggactccgccgaggaagtgtggatcggctacagcccgcacctgt
ggaccaacgccatcaccgcccgtatcaccggttcggcagccctgcgcaaacggcacatgc
gccagctggacatggccgagctggttagcggcaacccggcgccgtccacccagccccatg
tgctgccagtcagtgccctgcaaacctgggtcgaagacttcaagccaaccgagcggcgca
tgccgctaa
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