Pseudomonas putida BIRD-1: PPUBIRD1_3554
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Entry
PPUBIRD1_3554 CDS
T01975
Name
(GenBank) D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase
KO
K07259
serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:
3.4.16.4
3.4.21.-]
Organism
ppb
Pseudomonas putida BIRD-1
Pathway
ppb00550
Peptidoglycan biosynthesis
ppb01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
ppb00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
PPUBIRD1_3554
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
ppb01002
]
PPUBIRD1_3554
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
ppb01011
]
PPUBIRD1_3554
Enzymes [BR:
ppb01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.16 Serine-type carboxypeptidases
3.4.16.4 serine-type D-Ala-D-Ala carboxypeptidase
PPUBIRD1_3554
Peptidases and inhibitors [BR:
ppb01002
]
Serine peptidases
Family S13: D-Ala-D-Ala peptidase C family
PPUBIRD1_3554
Peptidoglycan biosynthesis and degradation proteins [BR:
ppb01011
]
Peptidoglycan biosynthesis and degradation
DD-Carboxypeptidase/DD-Endopeptidase (Low molecular weight PBP)
PPUBIRD1_3554
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_S13
Motif
Other DBs
NCBI-ProteinID:
ADR61147
LinkDB
All DBs
Position
3973622..3975076
Genome browser
AA seq
484 aa
AA seq
DB search
MIKTLRPFILAGLLLPLALPSHAAVNTTLPAKVQQALKANKLQDTALSLVMLPLDGPGTP
TVFNADVSVNPASTMKLVTTYAALELLGPTFQWKTEFYTDGTLSNGVLNGNLYLKGGGDP
KLNMEKLWLLMRDLRANGVRTVTGDLVLDRSHFVQPNLPQFNDDGGDENKPFLVKPDSLL
VNLKALRFVARNDGGKVTVAVEPPIASIRIDNQIKPVASKKCTGDVRYNPVPQADGISVT
VSGQLGDGCNSQTYLSLLDHPTYAAGAVRAIWNELGGNIQGGDRIENVPKSARLLARAFS
PDLVEVIRDINKYSNNTMAQQLFLSLGAQFRTDADGDDARAAQRVVRQWLAKKGITAPHL
VMENGSGLSRAERVSTREMAEMLKAAWKSPYAAEFMSSMPLVGMDGTMRKRLKRTAMTGE
GHIKTGTLNTVRAIAGFSRDSNGHTWAVAAILNDPKPWGASQVLDQVLLDLYRQPKLAGS
TAAN
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
atgatcaaaacgcttcgtcccttcatacttgccggcctgctgttgccacttgccttgccc
agccacgccgccgtcaataccaccctgcctgccaaagtgcagcaggcgctcaaggccaac
aaactgcaggacacagcactgtcgctggtgatgctgccgctggacggccccggcaccccg
accgtgttcaatgccgatgtgtcggtgaacccggcgtcgaccatgaaactcgtcaccacc
tacgccgccctcgaactgctcggcccgaccttccagtggaaaaccgagttctacaccgac
ggcaccctgagcaacggcgtgcttaacggtaacctctaccttaaaggtggcggtgacccc
aaactgaacatggaaaagctgtggctgctgatgcgtgacctgcgcgccaatggcgtgcgc
accgtcaccggtgacctggtgctggaccgcagccacttcgtgcaacccaacctgccgcag
ttcaacgacgacggcggtgatgaaaacaagccgttcctggtcaagcccgactcgctgctg
gtcaacctcaaggccctgcgcttcgtggcgcgcaatgatggtggcaaggtcaccgtcgca
gtcgagccgccgattgccagtatccgtatcgacaaccagatcaagccggtagcctcgaag
aaatgcaccggtgatgtgcgctacaacccggtgccccaagccgacggcatcagtgtaacg
gtcagcggccaactgggtgacggctgcaactcgcaaacctacctgtcactgctcgaccat
cccacctacgccgccggtgccgtgcgcgcaatctggaacgaactgggtggcaacatccag
ggtggcgaccgcatcgagaatgtgcccaagagtgctcgcctgctggcccgagccttctcg
ccagacctggtggaagtgatccgcgacatcaacaagtacagcaacaacaccatggcccag
cagctgttcctgagccttggcgcgcagttccgcaccgatgccgatggcgacgacgcccgt
gctgcccagcgcgtggtacgccaatggctggcgaaaaagggcatcaccgcgccgcatctg
gtgatggaaaacggctctggcctgtcgcgtgccgaacgggtcagtacccgggaaatggcc
gagatgctgaaagccgcctggaagagcccttacgctgccgagttcatgagctcgatgccg
ctggtgggcatggacggcacaatgcgcaaacgtctcaagcgcaccgcgatgaccggtgaa
gggcacatcaagaccggcacactgaacactgtgcgggcgattgccggcttcagccgcgac
agcaacggccatacctgggcggtagcggcaattctcaacgacccgaaaccgtggggtgcc
tcgcaggtgctggatcaggtgttgcttgacctgtatcgccagccgaagctggctggcagt
acagcggccaactga
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