Pseudomonas putida BIRD-1: PPUBIRD1_3627
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Entry
PPUBIRD1_3627 CDS
T01975
Symbol
sbcC
Name
(GenBank) SbcC
KO
K03546
DNA repair protein SbcC/Rad50
Organism
ppb
Pseudomonas putida BIRD-1
Brite
KEGG Orthology (KO) [BR:
ppb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppb03400
]
PPUBIRD1_3627 (sbcC)
DNA repair and recombination proteins [BR:
ppb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
PPUBIRD1_3627 (sbcC)
Archaeal homologous recombinant proteins
PPUBIRD1_3627 (sbcC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
SMC_N
AAA_21
AAA_29
ABC_tran
nSTAND3
RsgA_GTPase
MMR_HSR1
AAA_22
AAA_15
cobW
Motif
Other DBs
NCBI-ProteinID:
ADR61218
LinkDB
All DBs
Position
4064143..4067787
Genome browser
AA seq
1214 aa
AA seq
DB search
MKILAIRLKNLASLAGPIDIDFTAEPLASAGLFAITGPTGAGKSTLLDALCLALFGTVPR
LNAIGREAKVPDADGDIPTSDPRNLLRRGTGSGFAEVDFVGIDGRRYRARWEANRARDKA
NGKLQHSRQSFYDLDSEQVLGSGKNEYKQLVEARLGLNFEQFTRAVMLAQSEFGAFLKAD
DKDRSELLEKLTNTAIYTRLGQRAFSKAREAGEAHNALKERASHLLPMAAEARAELDQRL
EQAQQQFKADQAGERQLEQQRNWLNEQRQLQAQYTEANTTLQAAELDWQQLAEPRLDLAR
LERLAPQRHQFHRRQALTAQLAPVAAKMAEQQQQQAELQVRTRELEQALDTTRQALADRQ
AEHGENAPRLRQAFATQDTLARLDQELAAQRSIDQQAQQQVTDGQQQLQQLEDNQQRSVQ
QLAQIDTALADSQHLADLANAWHAYLPQLKQVMLIGGRLTKGREELPGLQAQASQANARL
QAERDAYDLLFREAKAEPQALAEQIDLLGGMLQDNRKQQRAVEEMSRLHGREQELRQQLD
ALRERQQQAMLQRQQLITEGTAAKAELEAAEQALTLTRQLLERQRLARNTSVEELREQLR
DGEPCPVCGSAEHPFHQPEALLQSLGRHDQAEEHAAQKQVETLNSKLVELRTQLGVVNAQ
LKDFQQQQQHLGEQLQPLVAQVQAHSLWPALAPQDDKARSAWLDSQLRRLDEEISQDEKR
QSALLALQKDAARLNQQLQAAHDAQQQAQRHLEQQHQALANDEQQLQQGLDDLAGVLPKE
ALKALNEDPANAFLALDQQIAQRLQQLEQRKDELEEQQARQAQLDKLRDQQQARVQGLQQ
LQHTLAALDEQRQQAQTSLGELLGEHASAEAWQQHMEATLEQARALNADTAQRLQDLRTQ
GVQLASELKANTQQQQALDAECQQLQAQIAQWRSEHPELDDAGLDRLLAMDDAQVNELRQ
RLQGAEKAIEQGRVLLQEREQRLQHHAAQMTVDTPAEALEHALTELRGRLANHEQQCAEL
RAQQADDQRRQQAHQALAAEIEQAHQQWQRWARLNALIGSASGDVFRKIAQGYNLDLLLH
HANAQLRQLARRYRLKRGGSALGLLVLDTEMGDELRSVHSLSGGETFLVSLALALGLASM
ASSTLRIESLFIDEGFGSLDPESLQLAMDALDGLQAQGRKVAVISHVQEMHERIPVQIQV
RRQGNGLSDVEVCG
NT seq
3645 nt
NT seq
+upstream
nt +downstream
nt
atgaagattctcgccatccgcctgaagaacctggcatcgctggccggcccgatcgacatc
gatttcaccgcagaacccttggccagcgctggcctgttcgccatcaccgggcctaccggt
gctggcaagagcaccttgcttgacgccctgtgcctggcgctgttcggcaccgtgccgcgc
ctcaatgccattggccgtgaggccaaggtgccggatgccgacggcgacatccccacctcc
gacccgcgcaacctgctgcgccgtggcaccggcagcggttttgccgaggtcgacttcgtc
ggcatcgacggccgccgctaccgcgcccgctgggaagccaaccgcgcccgcgacaaggcc
aacggcaaactgcaacacagccgtcagagcttctacgacctcgacagcgagcaagtgctc
ggcagtggcaagaacgaatacaagcaactggtcgaagcccgcctgggcctgaacttcgag
cagttcacccgtgcggtgatgctggcccagagcgagttcggcgcgtttctcaaagccgac
gacaaagaccgcagcgagttgctggaaaagctcaccaacaccgcgatctacacccgcctg
ggccagcgtgccttcagcaaggcgcgcgaagccggcgaggcacacaacgccctgaaagaa
cgcgccagccatctgctgccgatggctgccgaggcccgtgccgagctcgaccagcgcctg
gagcaggcgcaacagcagttcaaggccgaccaggccggcgagcgccagctggagcagcaa
cgcaactggctgaatgaacaacgccagctacaagcccaatacaccgaagccaataccacg
ctgcaggccgccgaactggactggcaacagctggccgaaccacgcctggacctggcacgc
ctggagcgcctggccccacagcgtcaccagttccaccgccgacaggccctgaccgcacag
ctggcaccagtggccgcgaagatggccgaacagcaacagcagcaagccgaactgcaggtg
cgcacccgcgaactcgaacaggcgctggacactacgcgccaagcgcttgccgaccgccag
gccgagcacggcgagaacgcgccgcgcctgcgccaggcctttgccacccaggatacgctg
gcacgcctggaccaagagctggccgcccagcgcagcatcgaccagcaggcgcaacagcag
gtcaccgacggccagcagcaattgcagcagctggaagacaaccagcaacgcagcgtgcag
caactggcgcagatcgacaccgcgcttgccgacagccagcacctggcggacctggccaat
gcctggcacgcctacctgccgcaactgaagcaggtgatgctgataggtggccggctgacc
aagggccgagaagagctacccggcttgcaggcccaggccagccaggccaatgcgcgcttg
caggccgagcgcgacgcctacgacctgttgttccgtgaagccaaggccgaaccccaggcc
ctggccgagcagatcgacctgctcggcggcatgctgcaggacaaccgcaaacagcagcgc
gccgtagaggaaatgtcacgcctgcacggccgcgaacaggagctgcgccagcagctggat
gccctgcgcgaacggcagcagcaggccatgctgcaacgccagcaactgattaccgaaggc
accgccgccaaggccgagctggaggccgccgaacaggcgttgacgctcacccgtcaactg
ctggaacggcaacgtctggcacgcaacaccagcgtcgaagaactgcgtgaacaactgcgt
gacggcgaaccctgcccggtctgtggcagcgccgaacaccccttccatcagccagaagcg
ctgctgcagagcctgggtcgccatgaccaggccgaagagcacgccgcgcagaagcaggtc
gaaacgctcaacagcaagctggtggagctgcgtacccagctgggtgtggtcaatgcccag
ctcaaggacttccagcagcaacagcagcacctgggcgaacagttgcaaccactggtggct
caggtacaggcccacagcctgtggccagccctcgccccgcaggacgacaaggcccgtagc
gcctggctcgacagccagctgcgtcgcctggatgaagaaatcagccaggacgagaaacgc
cagagcgccctgctggccctgcaaaaagacgccgcccgcctgaaccagcaattgcaggcg
gcccacgacgcccagcaacaggcccagcgccatctggagcaacagcaccaggccctggcc
aacgatgagcaacagttgcagcaaggccttgacgacctggccggtgtcttgcccaaggaa
gccctcaaggccctgaacgaagatccggccaatgccttcctcgccctcgaccagcagatt
gcccagcgcctgcagcaactggaacagcgcaaggacgaactggaagagcagcaggcccgc
caagcccagctggacaaactgcgcgatcagcaacaggcgcgcgtgcaaggcctgcagcag
ttgcaacacacgctcgcggccctcgacgaacagcgccagcaggcccagacgtcgctcggc
gagctgcttggcgaacatgccagtgccgaagcctggcagcagcatatggaagccacgctg
gaacaagcccgcgccctcaatgccgacaccgcccagcgcctgcaagatctacgcacccaa
ggcgtgcaactggccagcgaactcaaagccaatacccagcaacaacaagcactggatgcc
gaatgccaacagttgcaggcccagatcgcccagtggcgcagcgagcatccggaactggac
gatgccggcctcgatcgcctgctggccatggatgacgcgcaagtcaatgaattgcgccag
cgtttgcaaggcgcggaaaaagccatcgagcagggccgtgtgctgctgcaggagcgcgaa
cagcgcctgcagcaccacgctgcacagatgaccgtggacaccccggccgaagccctggaa
cacgccctgaccgagctgcgcgggcgcctggccaaccatgagcagcaatgcgccgaattg
cgtgcacaacaggccgacgaccagcgccggcagcaggcccaccaggcgctggcggcagaa
atcgaacaggcccaccagcagtggcaacgctgggcccgcctcaatgccctgatcggttcg
gcctccggtgatgtgttccgcaagatcgcccaaggctacaaccttgacctgctgctgcac
cacgccaacgcccagctacgtcagctggcccgtcgctatcgcctcaagcgcggcggcagc
gcccttggcctgctggtgctggacaccgagatgggcgacgaactgcgttcggtgcactcg
ttgtcgggcggggaaaccttcctggtgtcgctggccctggccctgggcctggcgtcgatg
gcgtccagcaccttgcgtatcgagtcgctgttcatcgacgaaggcttcggcagcctcgac
cccgagtcgctgcaactggcaatggacgccctcgacggcttgcaagcccagggtcgcaaa
gtggcggtgatttcccacgtacaggaaatgcacgagcgcatcccggtgcagatccaggtg
cggcgccagggtaatggcctcagtgacgtggaggtgtgcgggtga
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integrated database retrieval system
