Pseudomonas putida BIRD-1: PPUBIRD1_3992
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Entry
PPUBIRD1_3992 CDS
T01975
Symbol
rpoS
Name
(GenBank) RpoS
KO
K03087
RNA polymerase nonessential primary-like sigma factor
Organism
ppb
Pseudomonas putida BIRD-1
Brite
KEGG Orthology (KO) [BR:
ppb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppb03021
]
PPUBIRD1_3992 (rpoS)
Transcription machinery [BR:
ppb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
PPUBIRD1_3992 (rpoS)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r3
Sigma70_r4
Sigma70_r1_2
KinB_sensor
Motif
Other DBs
NCBI-ProteinID:
ADR61575
LinkDB
All DBs
Position
complement(4467275..4468282)
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AA seq
335 aa
AA seq
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MALSKEVPEFDIDDDVLLMETGIVLETDVVSDEPAVSSVRTRAKSGSSLKQHKYIDYSRA
LDATQLYLNEIGFSPLLSPEEEVHFARLSQKGDPAGRKRMIESNLRLVVKIARRYVNRGL
SLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHVVKE
LNVYLRAARELTQKLDHEPSPEEIATLLEKPVAEVKRMLGLNERVSSVDVSLGPDSDKTL
LDTLTDDRPTDPCELLQDDDLSQSIDQWLGELTDKQREVVVRRFGLRGHESSTLEDVGLE
IGLTRERVRQIQVEGLKRLREILEKNGLSSESLFQ
NT seq
1008 nt
NT seq
+upstream
nt +downstream
nt
atggctctcagtaaagaagtgccggagtttgacatcgacgatgacgtcctcctgatggag
acgggtatcgttttggaaacggatgtggtgtcagacgaacctgctgtatcttcggttcgg
acgagggccaaatcgggctcttcgctcaagcaacacaagtacatcgattacagcagggcg
ctcgatgccacccagctgtacctcaacgagattggtttctcgccgctgctttcgccggaa
gaagaagtgcattttgcgcgcttgtcgcaaaagggtgaccctgccggccgcaagcgcatg
atcgaaagcaacctgcgcctggttgtcaaaattgcccgtcgatacgtgaaccgtggcctg
tcgttgctcgacctgatcgaggagggcaacctggggctgatccgtgcggtcgaaaagttc
gacccggagcgtggtttccgtttttcgacctatgcgacctggtggattcgccagaccatc
gaacgggcgatcatgaaccagacccgcaccattcgcctgccgatccacgtggtcaaggaa
ctgaacgtgtacctgcgcgccgcgcgcgagctgacgcagaaactcgaccacgagccctcg
ccggaagaaatcgccaccttgctggaaaagccggtcgccgaggtcaagcgtatgctcggc
ctgaacgagcgggtgtcttcggtagacgtgtcgcttggcccggattcggacaagaccctg
cttgataccctgaccgacgaccgcccgaccgacccgtgcgaactgctgcaggatgacgac
ctgtcgcagagcatcgatcagtggctgggcgagttgaccgacaagcagcgtgaagtggtt
gtacgccgctttggccttcgcggccatgaaagcagtaccctggaggatgttgggctggag
atcggccttacccgtgaacgcgtgcggcaaatccaggtggaagggctcaagcgcttgcgc
gagatccttgaaaagaatggtctgtccagcgagtcattgttccagtag
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