Pseudomonas putida BIRD-1: PPUBIRD1_3996
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Entry
PPUBIRD1_3996 CDS
T01975
Symbol
truD
Name
(GenBank) TruD
KO
K06176
tRNA pseudouridine13 synthase [EC:
5.4.99.27
]
Organism
ppb
Pseudomonas putida BIRD-1
Brite
KEGG Orthology (KO) [BR:
ppb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ppb03016
]
PPUBIRD1_3996 (truD)
Enzymes [BR:
ppb01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.27 tRNA pseudouridine13 synthase
PPUBIRD1_3996 (truD)
Transfer RNA biogenesis [BR:
ppb03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
PPUBIRD1_3996 (truD)
Prokaryotic type
PPUBIRD1_3996 (truD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruD
CinA_KH
Motif
Other DBs
NCBI-ProteinID:
ADR61579
LinkDB
All DBs
Position
complement(4470897..4471955)
Genome browser
AA seq
352 aa
AA seq
DB search
MIELELLGPRASGEPLGTAVLKAVAEDFQVDEVLDIPLSGQGEHLWLWVEKRDLNTEEAA
RRLARAAGVPVRSISYAGLKDRQALTRQWFSLHLPGKADPDLSRAEDASLRVLKQVRHQR
KLQRGAHSANGFTLRLTALAADHQAVDARLEQLRQQGVPNYFGTQRFGHGGGNVHDALDW
AARKALPEQRNVRSRLLSAGRSYLFNQLLAARVADGSWARAQVGDLLAFTDSRSFFPAGE
AECADPRLAILDLHPTGPMWGEGASPAGAAPAQLENAIGARQPALCQWLAQAGMDHERRI
LRLPIGGLTWHYPEPDILQLEFVLPAGCFATVVVREVVDLVSAGQTDSPCVF
NT seq
1059 nt
NT seq
+upstream
nt +downstream
nt
atgatcgaacttgaactgctgggcccgcgcgcatcgggcgaaccgctgggcaccgccgtc
ctcaaagcggttgccgaagactttcaggttgacgaagtcctggatataccgctatcgggc
caaggcgagcacctgtggctgtgggtcgagaagcgtgatctgaacactgaagaagccgcc
cggcgccttgcccgcgccgctggcgtgccggtgcgcagcatcagctacgccggcctgaag
gatcgccaggcgctgacccgccagtggttcagcctgcacctgccgggcaaggccgacccg
gatctgtcgcgtgccgaggatgccagcctgcgtgtgctcaaacaggtgcgtcaccagcgc
aaactgcagcgcggcgcgcattcggccaacgggttcaccttgcgcctgaccgccctggct
gccgatcaccaggcggtggatgcccgcctggagcagctcaggcagcaaggtgtgcccaac
tatttcggcacccagcgcttcgggcacgggggtggcaacgtccatgacgccctcgattgg
gccgcgcgcaaggctttgcctgaacagcgcaacgtgcgatcgcggctgctttcggccggg
cgcagctacctgttcaatcagttgctggctgcgcgtgtggctgacggtagctgggcccga
gcccaggtcggcgacctgctggcgttcaccgacagccgcagtttcttcccggcgggtgag
gcggaatgtgccgacccgcgcctggcgattctcgacttgcatccaaccggcccgatgtgg
ggggagggcgcttcacctgctggcgctgcgcctgcgcagctggaaaacgctatcggcgca
cgtcagccggcactttgccagtggctggcccaggcgggcatggatcacgaacggcgaatt
ctgcggctccctattggcggcctgacgtggcattatcccgagcctgatatcctgcaactg
gaattcgtcctgccggccggatgcttcgccaccgtggtggtgcgtgaagtcgtggatctg
gtgtcggcagggcagacggacagcccatgcgtattctga
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