Pseudomonas putida BIRD-1: PPUBIRD1_4035
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Entry
PPUBIRD1_4035 CDS
T01975
Symbol
dapE
Name
(GenBank) DapE
KO
K01439
succinyl-diaminopimelate desuccinylase [EC:
3.5.1.18
]
Organism
ppb
Pseudomonas putida BIRD-1
Pathway
ppb00300
Lysine biosynthesis
ppb01100
Metabolic pathways
ppb01120
Microbial metabolism in diverse environments
ppb01230
Biosynthesis of amino acids
Module
ppb_M00016
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
ppb00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
PPUBIRD1_4035 (dapE)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
ppb01002
]
PPUBIRD1_4035 (dapE)
Enzymes [BR:
ppb01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.18 succinyl-diaminopimelate desuccinylase
PPUBIRD1_4035 (dapE)
Peptidases and inhibitors [BR:
ppb01002
]
Metallo peptidases
Family M20
PPUBIRD1_4035 (dapE)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_M20
M20_dimer
Peptidase_M28
Glyco_transf_20
BNR_2
Motif
Other DBs
NCBI-ProteinID:
ADR61618
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All DBs
Position
4515978..4517129
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AA seq
383 aa
AA seq
DB search
MTAPAELSPTLQLACDLIRRPSVTPVDADCQAQMMSRLGAVGFQLEPMRIEDVDNFWATH
GSQDGPVLCFAGHTDVVPTGPVQQWQHEPFEALIDADGMLCGRGAADMKGSLASMVIASE
RFVQDYPNHRGKVAFLITSDEEGPAHHGTKAVVERLKARNERLDWCIVGEPSSTTLLGDV
VKNGRRGSLGAKLTIRGKQGHVAYPHLARNPIHLAAPALAELAAEHWDEGNAFFPPTSFQ
ISNLNSGTGATNVVPGELTALFNFRFSTESTVEGLQARVSAILDKHELDWSVDWALSGLP
FLTEPGELLDAVAASIKGVTGRDTQPSTSGGTSDGRFIATMGTQVVELGPVNATIHQVDE
RILASDLDLLTEIYYQTLVRLLA
NT seq
1152 nt
NT seq
+upstream
nt +downstream
nt
atgacggcccctgccgagctctcgcctacccttcaactggcctgcgaccttatccgtcgc
ccctcggtcacccccgtcgacgccgattgccaggcgcagatgatgagccgtctgggcgcc
gtcggtttccagctggagccgatgcgcattgaagacgtcgacaacttctgggctacccac
ggcagccaggacggcccggtactgtgttttgccggccacaccgacgtggtgcctaccggc
ccggtccagcaatggcagcatgaacccttcgaggcactgatcgacgccgacggcatgctc
tgcggccgtggcgccgccgacatgaagggcagcctggcgtccatggtcatcgccagcgag
cgcttcgtgcaggactacccgaaccatcgcggcaaggtcgcgtttctgatcaccagcgac
gaggaaggccccgcccaccacggcaccaaagcggtggtcgagcgcctgaaagcgcgcaac
gagcgcctggactggtgcatcgtcggcgaaccgtccagcaccaccttgttgggtgacgtg
gtcaagaacggtcgccgcggttcgctgggcgccaaactgaccatacgcggcaagcagggc
catgtggcctacccgcacctggcgcgcaacccgatccacctggccgccccggccctggcg
gaactggctgccgagcactgggacgaaggcaatgccttcttcccgccaactagcttccag
atctccaacctcaattccggcaccggcgctaccaacgtggtcccgggcgagctgaccgcg
ctgttcaacttccgcttctctaccgagtccaccgtcgaaggcctgcaggcccgagtgtcg
gcgattctcgacaagcatgaactggactggtcggtcgactgggcactgtcgggcctaccg
ttcctgaccgaaccaggcgagctgctcgacgccgtggcggccagcatcaagggcgtcacc
ggtcgcgatacccagccttccaccagcggcggtacctccgatggccgcttcatcgcaacc
atgggcacccaggtggtcgaactcggcccggtcaacgccaccatccaccaggttgacgag
cggatcctggccagcgacctcgatctgctgaccgaaatctactaccagaccctggtccgg
ttgctcgcctga
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