Pseudomonas putida BIRD-1: PPUBIRD1_4082
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Entry
PPUBIRD1_4082 CDS
T01975
Name
(GenBank) Single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
ppb
Pseudomonas putida BIRD-1
Pathway
ppb03410
Base excision repair
ppb03430
Mismatch repair
ppb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ppb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
PPUBIRD1_4082
03430 Mismatch repair
PPUBIRD1_4082
03440 Homologous recombination
PPUBIRD1_4082
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppb03400
]
PPUBIRD1_4082
DNA repair and recombination proteins [BR:
ppb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
PPUBIRD1_4082
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
PPUBIRD1_4082
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PPUBIRD1_4082
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
ADR61664
LinkDB
All DBs
Position
complement(4564479..4566188)
Genome browser
AA seq
569 aa
AA seq
DB search
MRIEPRPLPPTLPFLGNLPPLLTRLYAARGVQSEAELDKSLARLLPYQQLKGIEAGVDLL
VEAIDQRQRILIVGDFDADGATASTVGVLGLRLLGAAHVDYLVPNRFEYGYGLTPEIVEV
ALQRQPQLLITVDNGISSVDGVAAAKAAGLKVLVTDHHLPGEQLPDADAIINPNQPGCAF
PSKSLAGVGVIFYVLMALRARLRSLGRYETQPQPNIGELLDLVALGSVADVVPLDANNRI
LVHQGLERIRAGRARPGLKAILEVARRDHRRITSTDLGFILGPRLNAAGRLDDMSLGIEC
LLCEDAALAQDMAQQLDDLNQDRKSIEQGMQREALAQLKDLPVESMPYGLCLFDADWHQG
VIGILASRLKERYHRPTIAFADAGDGMLKGSARSVPGFHIRDALDAVAARHPHLISKFGG
HAMAAGLSLPEGNFPAFAEAFDEEVRRQLREEDLTGRLLSDGSLAVEEFHLDLAKALRHA
GPWGQHFPEPLFHGVFQLVEQRVVGERHLKVVLKSECGSVRLDGIAFGVDREVWPNPTVR
WVELAYKLDVNEFRGNESVQLMIAHMEPR
NT seq
1710 nt
NT seq
+upstream
nt +downstream
nt
atgcgtatcgaacctcgcccgctgccgccgaccctgccatttctgggtaacctgccaccc
ttgctgacccgcctttacgccgcgcgcggcgtgcagagcgaggccgagctggacaaaagc
ctggcacgcctgctgccgtaccagcagctcaagggcatagaggccggtgtggacctgctg
gtcgaagccatcgaccagcgtcagcgcatcctcatcgtcggcgacttcgatgccgacggt
gccactgccagcaccgtcggggtgctgggcctgcgcctgctgggcgcggcccatgtcgat
tacctggtgccaaaccgcttcgagtacggctacggcctgaccccggaaatcgtcgaggtg
gcgctgcagcgccagccgcagttgctgattaccgtggacaacggcatttccagtgtcgac
ggggtggcggccgccaaggccgccgggctcaaggtgctggtcaccgaccaccacttgccg
ggcgagcagttgcccgacgccgatgccatcatcaaccccaaccagccgggttgtgcgttc
ccgagcaagtcactggccggggtaggggtgatcttctatgtgctgatggccctgcgcgct
cgcttgcgcagccttgggcgctacgagacgcagccacagccgaacattggcgaactgctt
gatctggtggccctgggcagtgtcgctgacgtggtgccgctggatgccaacaaccgcatc
ctggtgcaccaaggccttgagcgcattcgcgccggccgagcccggccggggctgaaggcc
attctcgaagtggcccgccgcgaccatcggcgtattacctcgaccgacctcggtttcatc
ctcggcccgcgcttgaacgccgcgggccgcctggacgacatgagcctgggcatcgaatgc
ctgctgtgcgaagacgcggcattggcccaggacatggcacagcaactggacgacctgaac
caggaccgcaagtccatcgagcagggcatgcagcgcgaggccctggcccagctcaaggac
ctgccggtcgagtccatgccctacggcttgtgcctgttcgatgccgattggcaccaaggg
gtgatcggtattctggcttcgcgtctgaaggaacgttaccaccggccgaccattgcgttc
gctgatgctggcgacggcatgctcaaaggttcggcgcgctcggtgccggggttccatatt
cgcgatgcgctggatgccgtggccgcgcgccacccgcacctgatcagcaagttcggcggc
cacgccatggctgccggtttgtcgttgccagaaggcaacttcccggcattcgccgaggcc
ttcgacgaagaagtgcggcgtcaactgcgcgaagaagacctgaccggccggctgttgtcc
gacggcagcctggcggtagaggagttccacctcgacctggccaaggccctgcgccatgcc
ggcccatggggccagcacttcccagagccgctgttccatggcgtgttccagctggtggag
cagcgtgtggttggcgagcggcacctgaaggtggtgctcaagagcgagtgtggttcggta
cggctggatggcattgccttcggcgtcgatcgcgaagtgtggccgaacccgaccgtgcgt
tgggtcgagttggcgtacaagctggatgtgaacgagtttcggggcaatgaaagtgtgcag
ttgatgattgcccacatggagccgcgctga
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