Pseudomonas putida BIRD-1: PPUBIRD1_4123
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Entry
PPUBIRD1_4123 CDS
T01975
Symbol
rnc
Name
(GenBank) Rnc
KO
K03685
ribonuclease III [EC:
3.1.26.3
]
Organism
ppb
Pseudomonas putida BIRD-1
Pathway
ppb03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
ppb00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
PPUBIRD1_4123 (rnc)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppb03019
]
PPUBIRD1_4123 (rnc)
03009 Ribosome biogenesis [BR:
ppb03009
]
PPUBIRD1_4123 (rnc)
03036 Chromosome and associated proteins [BR:
ppb03036
]
PPUBIRD1_4123 (rnc)
Enzymes [BR:
ppb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.3 ribonuclease III
PPUBIRD1_4123 (rnc)
Messenger RNA biogenesis [BR:
ppb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PPUBIRD1_4123 (rnc)
Ribosome biogenesis [BR:
ppb03009
]
Eukaryotic type
90S particles
RNase
PPUBIRD1_4123 (rnc)
Prokaryotic type
rRNA processing factors
PPUBIRD1_4123 (rnc)
Chromosome and associated proteins [BR:
ppb03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Microprocessor complex
PPUBIRD1_4123 (rnc)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonucleas_3_3
Ribonuclease_3
dsrm
RM44_endonuclase
DSRM_2
Motif
Other DBs
NCBI-ProteinID:
ADR61705
LinkDB
All DBs
Position
complement(4608343..4609032)
Genome browser
AA seq
229 aa
AA seq
DB search
MSASLAGLERKLGYTFKNQDQMLLALTHRSYAGRNNERLEFLGDAILNFVAGEALFERFP
QAREGQLSRLRARLVKGETLARLARGFDLGDYLRLGSGELKSGGFRRESILADALEALIG
AIYLDADMDTARERILAWLADEFEGLTLVDTNKDPKTRLQEFLQSRSCELPRYEVVDIQG
EPHCRTFFVECEVVLLNNKSRGQGVSRRIAEQVAAASALIALGVENGND
NT seq
690 nt
NT seq
+upstream
nt +downstream
nt
atgagtgcttcccttgccggtctggagcgaaagctcggttacaccttcaagaaccaggac
cagatgctcctggcgctgacccatcgcagttacgccgggcgcaacaatgagcgcctggag
ttcctcggtgacgccattctcaacttcgttgccggcgaagcgctgttcgagcgttttccg
caggcccgcgaaggccagttgtcgcggctgcgtgcgcggttggtcaagggtgagaccctg
gcccgtctggcccgtggttttgacctgggcgattacctgcgcctgggttctggagaacta
aagagcggcggctttcgccgcgagtcgatcctggccgacgccctggaggcactgattggt
gccatctacctggacgccgacatggacaccgcccgggagcgcatcctggcctggctggcc
gatgagttcgaaggcctgacactggtcgacaccaataaagatccgaaaacccgcctgcaa
gagttcctgcagtcgcgcagctgtgagctgccgcgttacgaagtcgtggatatccagggt
gaaccacactgccggaccttcttcgtcgaatgcgaagtggtactgctgaacaacaagagc
cgtggtcaaggcgttagccggcgtattgccgagcaagtcgccgccgcgtctgcactgatc
gccctgggcgtggagaatggcaatgactga
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