Pseudomonas putida BIRD-1: PPUBIRD1_4266
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Entry
PPUBIRD1_4266 CDS
T01975
Symbol
rhlB
Name
(GenBank) RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
ppb
Pseudomonas putida BIRD-1
Pathway
ppb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PPUBIRD1_4266 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppb03019
]
PPUBIRD1_4266 (rhlB)
Enzymes [BR:
ppb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PPUBIRD1_4266 (rhlB)
Messenger RNA biogenesis [BR:
ppb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PPUBIRD1_4266 (rhlB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
DUF7464
Motif
Other DBs
NCBI-ProteinID:
ADR61842
LinkDB
All DBs
Position
4759243..4760685
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AA seq
480 aa
AA seq
DB search
MLKALRKIFGKGEAAPQAAAPAASVTPEARPAAKPAAPHANPAPKAEQPAAATPPAEQPA
KDKPRRERKPKPQASLWKPEDFVVEPQEGKTRFHDFKLSNELMHAIHDLGFPYCTPIQAQ
VLGYTLRGQDAIGRAQTGTGKTAAFLISIISQLQQTPPPKERYMGEPRALIIAPTRELVV
QIAKDAAALTKYTGLNVMSFVGGMDFDKQLKALEARHCDILVATPGRLLDFNQRGEVHLD
MVEVMVLDEADRMLDMGFIPQVRQIIRQTPPKSERQTLLFSATFTDDVMNLAKQWTTNPA
IVEIEPENVASETVEQHVYAVAGSDKYKLLYNLVTQNKWERVMVFANRKDEVRRIEEKLV
RDGINAAQLSGDVPQHKRIRTLESFREGRITVLVATDVAGRGIHIDGISHVINFTLPEDP
DDYVHRIGRTGRAGTSGVSISFAGEDDSYQLPAIEALLGRKIKCEMPPDELLKPVPRKHH
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
gtgctcaaagcactcagaaaaatattcggcaagggagaggccgcgccacaagccgccgct
cctgctgccagcgtgacgccggaagcccggcccgcggcaaaaccggccgcaccacatgcc
aaccccgcccccaaggctgagcaacctgccgccgcgacgccacctgccgaacaaccggcc
aaggacaaaccgcgccgcgaacgcaagcccaagccacaggccagcctgtggaagcccgaa
gacttcgtggtcgagccgcaggaaggcaaaacccgcttccacgacttcaagctgtccaac
gagctgatgcacgccatccacgacctgggcttcccgtactgcacgccgatccaggcgcag
gtcctgggttacaccctgcgtggccaggacgccatcggccgggcccagacgggcaccggc
aagacggccgccttcctgatctcgatcatttcccagttacagcagacgccaccgcctaaa
gagcgctacatgggcgagccgcgcgcgctgatcatcgcccccacccgcgagctggtggtg
cagatcgccaaggacgccgctgccctgaccaagtacaccggcctgaacgtgatgagcttc
gtcggtggcatggacttcgacaagcagctcaaagccctggaagcgcgccactgcgatatt
ctggtggccaccccgggccgcctgctggacttcaaccagcgtggcgaagtgcacctggac
atggtcgaggtgatggtgcttgacgaagccgaccgcatgctcgacatgggcttcatcccc
caggtccgccaaatcattcgtcagacaccgccgaaaagcgagcgccagaccctgctgttc
tccgccaccttcaccgacgatgtgatgaacctggccaagcagtggaccaccaacccggcc
atcgtcgagatcgagccggagaacgtggccagcgaaacggtggagcagcatgtgtatgcg
gtggccggcagcgacaagtacaaactgctgtataacctggtgacccaaaacaagtgggaa
cgggtgatggtgttcgccaaccgcaaggacgaagtgcggcgcatcgaggaaaagctggta
cgcgacggtatcaatgcggcccagctgtcgggcgacgtgccgcagcacaagcgcatccga
accctggagagcttccgcgaagggcgcatcaccgtgctggtggccaccgacgtggccggg
cgcgggatccatatcgatggcatcagccacgtgatcaacttcaccctgccggaagaccct
gacgactacgtgcaccgcattggccgtaccggccgtgccggcaccagtggtgtgtcgatc
agctttgccggtgaagatgactcgtatcagttgccggcgatcgaagcgctgctggggcgc
aagatcaagtgcgagatgccgccggatgaactgctcaagccggtgccgcgcaaacaccac
tga
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