Pseudomonas putida BIRD-1: PPUBIRD1_4340
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Entry
PPUBIRD1_4340 CDS
T01975
Symbol
radA
Name
(GenBank) RadA
KO
K04485
DNA repair protein RadA/Sms
Organism
ppb
Pseudomonas putida BIRD-1
Brite
KEGG Orthology (KO) [BR:
ppb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppb03400
]
PPUBIRD1_4340 (radA)
DNA repair and recombination proteins [BR:
ppb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
PPUBIRD1_4340 (radA)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATPase
AAA_25
Zn_ribbon_LapB
ChlI
Lon_C
AAA_16
DnaB_C
GvpD_P-loop
AAA_22
AAA
Rad51
RecA
SLFN-g3_helicase
DUF7125
nSTAND3
AAA_24
NTPase_1
AAA_14
MCM
zf-C2H2_6
DUF7129
Motif
Other DBs
NCBI-ProteinID:
ADR61914
LinkDB
All DBs
Position
complement(4839538..4840908)
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AA seq
456 aa
AA seq
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MAKAKRLYGCTECGATFPKWAGQCGECGAWNTLVETMIESGGAAAPSSGRAGWTGQQAQI
KTLAEVSVEEIPRFTTSSTELDRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNIAVGM
PALYVTGEESQQQVAMRSRRLGLPQDQLKVMTETCIETIIATARVEKPRVMVIDSIQTIF
TEQLQSAPGGVAQVRESTALLVRYAKQSGTAIFLVGHVTKEGSLAGPRVLEHMVDTVLYF
EGESDGRLRLLRAVKNRFGAVNELGVFGMTDRGLKEVSNPSAIFLNRTQEEVPGSVVMAT
WEGTRPMLVEVQALVDDSHLANPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVV
GGVKVLETASDLALLAAVMSSLRNRPLAHGLLVFGEIGLSGEVRPVPSGQERLKEAAKHG
FKRAIVPKGNAPKEAPAGLQVIAVTRLEQALDALFE
NT seq
1371 nt
NT seq
+upstream
nt +downstream
nt
atggccaaggccaagcgcttgtatggctgcaccgaatgcggcgcgaccttccccaaatgg
gccggccagtgcggcgaatgcggggcctggaacaccctggtcgaaaccatgatcgaaagc
ggcggcgctgctgcacccagtagcggccgcgctggctggacagggcagcaggcgcagatc
aagaccctggccgaggtcagtgtcgaggaaatcccgcgtttcaccaccagcagcaccgaa
ctggaccgtgtgctgggtggcggcctggtggatggctcggtggtgctgattggcggtgac
cccggcatcggcaaatcgaccattttgctacagaccttgtgcaacatcgccgtgggcatg
ccggcactgtatgtcacgggggaggagtcgcagcagcaggtggccatgcgctcgcggcgg
ctgggcctaccccaggaccagctcaaggtgatgaccgaaacctgcatcgagacgatcatt
gccacggcgcgggtcgagaagccgcgggtaatggtgatcgactcgatccagaccattttc
accgagcagttgcaatcggccccgggcggcgtggcccaggtgcgcgaaagcacagcgttg
ctggtgcgctatgccaagcaaagcggtacagcaatctttctggtcggccacgtgaccaag
gaaggctcgctggctggcccaagggtgctggagcacatggtcgacacggtgctgtatttc
gaaggtgagtccgatggccggctgcgcttgctgcgggcggtcaagaaccgctttggcgcg
gtcaacgagctgggcgtgttcggcatgaccgatcgtggcctcaaggaggtatccaacccg
tcggcgatcttcctcaaccgtactcaggaagaggtgccgggtagcgtggtgatggcaacc
tgggagggtacccggccaatgctggtcgaggtgcaggcgctggtcgacgatagccatctg
gccaacccgcggcgggtaaccttgggcctggaccagaaccgtctggccatgttgttggcc
gtgctccaccgccatggcggtatcccgacccatgaccaggatgtgtttctcaacgtggtc
ggcggggtgaaggtgctggaaacggcttcggacctggcgctgctggcggcggtgatgtcc
agcttgcgtaaccggccactggcccatggtttgctggtgtttggcgagatcggcttgtcg
ggcgaggtacggccggtacccagtggccaggagcgcttgaaggaagcggccaagcacggc
ttcaagcgtgccatcgtacccaagggcaatgcgccgaaagaagcgcctgcggggttgcag
gtgattgccgttacccgcctggaacaggcgctggatgcattgttcgaatag
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