Pseudomonas putida BIRD-1: PPUBIRD1_4371
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Entry
PPUBIRD1_4371 CDS
T01975
Symbol
recD
Name
(GenBank) RecD
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
ppb
Pseudomonas putida BIRD-1
Pathway
ppb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ppb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
PPUBIRD1_4371 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppb03400
]
PPUBIRD1_4371 (recD)
Enzymes [BR:
ppb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
PPUBIRD1_4371 (recD)
DNA repair and recombination proteins [BR:
ppb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
PPUBIRD1_4371 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
AAA_11
RecD_N
UvrD_C_2
Helicase_RecD
AAA_22
Viral_helicase1
SH3_13
UvrD-helicase
AAA_16
SLFN-g3_helicase
AAA_28
AAA_17
nSTAND3
T2SSE
NTPase_1
PhoH
AAA_5
NACHT
AAA_18
Motif
Other DBs
NCBI-ProteinID:
ADR61944
LinkDB
All DBs
Position
complement(4870115..4872190)
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AA seq
691 aa
AA seq
DB search
MSRSLVDLLPTPLHAEHLLALAPQHNSADLLQLLDRWVERGWLRALDRAFVSFLEERAPG
SDPLLLLAAALASHQLGHGHVCLDLQQTLAEPDFALSLPPEGDALIGPLLLPSQLLANLD
LNAWLQRISASPLVAAGDTPGQQARPLVRSGERLYLRRYWSYERRIDQALRQRLSQAEAP
PADLPERLAQLFEGGAPAGQVDWQKLACALATRAGFSIITGGPGTGKTTTVVRLLALLQA
PAVEQGRPLRIRLAAPTGKAAARLTESIGQQVERLQVSAEVRGQIPTEVNTVHRLLGSRP
GSRHFRHHAGNPLPLDVLVVDEASMIDLEMMANLLDALPPRARLVLLGDKDQLASVEAGA
VLGDLCRDAEEGFYSPATAAWLQQVSGESLAGSGLKAGDEQRHPLAQQVVMLRFSRRFGE
GSGIGQLARLVNRQDAHAARNLLAAPPADVHSLSLKHEQDRAFDRLLLDGLNRGTDGPQG
YRSYLRTLGRYRPALDTAFDDPAWEQWAGKVLRSFEDFQLLCAVRRGAWGVEGLNERVAR
VLHNAGLIDSHQPWYEGRPVLVTRNDYGLGLMNGDIGIALRLPDEHGQPLLRVAFPRNDG
SGGVRFVLPSRLNEVETVFAMTVHKSQGSEFSHTALVLPEALNPVLTKELVYTGITRAKH
CFSLVEPRQGIFEEAVARKVRRISGLMLEQV
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atgagccgaagccttgtcgacctgttgcccaccccgttgcacgcagagcacctgctggcg
ctggcaccacagcacaacagcgctgatctgctgcaattactcgaccgctgggttgagcgg
ggctggctacgtgccctggaccgcgcgttcgtgtcgttcctggaggagcgtgcccccggc
agtgatcccttactattgctggcagcggcgctggccagccaccaactggggcacggacat
gtctgcctcgacctgcaacaaaccttggccgagccggatttcgccctctcgttgccgccg
gaaggtgacgcccttatcggccctttgctactgccatcgcaactgctggccaaccttgac
ttgaatgcctggcttcagcgcatcagcgccagcccgctggtggccgcaggtgatacgcct
ggccagcaagcgcggccactggtacgcagtggcgagcgcctttacctgcgccgttactgg
agttacgagcggcgcatcgaccaggccctgcgccagcgcctgagtcaggccgaagcaccg
cctgcggacctgccagagcgcctggcgcaactgttcgagggcggtgcgccagctggccag
gtggactggcagaagctcgcctgcgccttggccacccgggccggtttcagcatcatcact
ggcggacccggcaccggcaagacgaccaccgtggtgcgcctgctggcgttgctgcaggcg
ccggcagtggagcagggcaggccactgcgcatccgcctggctgcgccgaccggcaaggcc
gctgcgcgcctgaccgaatccattggccagcaagtcgagcgcctgcaagtcagcgccgaa
gtacgcgggcaaatccccactgaagtcaacaccgtgcatcgcctgctcggcagccgcccg
ggctcgcggcatttccgccatcatgctggcaacccgttaccgttggacgtgctggtggtc
gacgaagcgtcgatgatcgacctggaaatgatggccaacctgctcgatgccttgccgccg
cgggcgcgtctggtgctgctgggcgacaaggaccagttggcctcggtcgaggccggcgcg
gtactgggtgacctgtgccgggatgctgaggagggcttttactcgccggcgactgcagcg
tggcttcagcaggtcagtggcgagtcgctggccggcagtggcctcaaggccggcgatgag
cagcgtcacccgctggcccagcaggtggtgatgctgcgtttttcacggcgtttcggtgaa
ggcagcggaattggccagctggccagactggtcaatcgtcaggacgctcacgcggcgcgc
aacctgctggccgcgccgcctgccgacgtgcacagcctgtcgctcaagcacgaacaggat
cgtgcgttcgaccgcctgttactcgacggcctgaaccgcggtaccgatggaccgcaaggc
taccgcagctacctgcgcacccttggccgttaccggccggcacttgataccgcctttgac
gaccccgcctgggagcaatgggcgggcaaggtgttgcgcagtttcgaggatttccagttg
ctgtgcgcggtgcgccggggcgcctggggtgtcgaaggcctcaacgagcgggtggcgcgg
gtgctgcacaatgccggtctgattgacagtcatcagccctggtacgaagggcgcccggtg
ttggtgacccgcaacgactacggccttggcctgatgaacggtgacatcggtattgccctg
cgcctgccggatgagcatggccagccgctgctgcgtgtggcgttcccgcgcaacgacggc
agtggtggtgtgcgattcgttctgccgagccggctcaacgaagtggaaacggtgttcgcc
atgaccgtgcacaagtcgcaaggctcggagttcagccacacagccctggtgctgccggag
gcgctcaacccggtgctgaccaaggaactggtgtacaccggcatcactcgggccaagcac
tgcttcagcctggtcgagccacggcaaggcattttcgaagaagcggtggcgcgcaaagta
cggcgtatttccgggttgatgctcgagcaggtctag
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