Pseudomonas putida BIRD-1: PPUBIRD1_4373
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Entry
PPUBIRD1_4373 CDS
T01975
Symbol
recB
Name
(GenBank) RecB
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
ppb
Pseudomonas putida BIRD-1
Pathway
ppb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ppb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
PPUBIRD1_4373 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppb03400
]
PPUBIRD1_4373 (recB)
Enzymes [BR:
ppb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
PPUBIRD1_4373 (recB)
DNA repair and recombination proteins [BR:
ppb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
PPUBIRD1_4373 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_11
AAA_30
AAA_25
PHBC_N
ResIII
MinC_N
Motif
Other DBs
NCBI-ProteinID:
ADR61946
LinkDB
All DBs
Position
complement(4873236..4875860)
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AA seq
874 aa
AA seq
DB search
MTQDRPLALSFPLHGSQLIEASAGTGKTFTISALYLRLILGHGGEQGFERELLPPQILVV
TFTDAATKELRERIRARLAEAARFFRGELEGADPLLHQLRDDYPQETWPRCAGRLEIAVQ
WMDEAAVSTIHGWCQRMLREHAFDSGSLFTQTLETDHSELLGQVMRDYWRRFCYGMQGDA
LAWVRGNWGSPDALLPRIRPLFGRVRAQQNGPEPAALIQASLQQRGAQLARIKAPWAQWA
EELRQICRDALAAKQVDGRKMQARYFEPWFDKLCAWASDEQLVELDLGTGFTRLTPTGMA
EAWKGEPPEHPALNAMQHLQQQLQALDSPDAPLLEHAASWVSARFEVEKRRRAEMGFDDM
LVRLQHALASEAGERLASLIREQFPVALIDEFQDTDPVQYGIFERIYQISENRAETGLFM
IGDPKQAIYAFRGADIYTYLAARRATSGRLHSLDTNYRSSKAMVAAVNQVFLQAEAREAG
RGAFLFREADDNPLPFIEVRAKGRGEQLLIDGEVSAALQCWQLESEEPVSSSVYRQQLAA
SCASHIVALLNGGQQGTAGFQNAEGELRACLPSDIAILVRDGHEAQMVRAELAARGVRSV
YLSDKDSVFAAQEAHDLLAWLKACAEPDSERLLKAALASLTLGLSLAALDRLNQDERVWE
SWVMRFRLYRDTWQRQGVLPMLRHLLHDFQLPRTLIRRSDGERVLTNLLHLAELLQQAAG
ELDGEQALIRHLAEHLASSGQAGEEQILRLESDEQLVKVVTIHKSKGLEYPLVYLPFICT
SKPVDGSRLPLAWHDSEGNAHLTLTPDQEQIERADDERLAEDLRLLYVALTRAQHACWLG
VADLKRGNLKSSQLHRSAFGYLLGAALPWLVRRS
NT seq
2625 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggaccgtcctctggcactgagtttccccctgcacggtagccagctgatcgag
gccagcgccggcacgggcaagaccttcaccatttcggcgctgtacctgcgcctgatcctc
ggtcacggtggcgaacagggcttcgagcgcgagctgctgccaccgcagatcctcgtggtg
accttcaccgacgccgccaccaaagagctgcgcgagcgtatccgcgcccgcctggctgaa
gccgcacggttcttccgtggcgagctggaaggcgccgatccgctgttgcaccaactgcgt
gacgattacccacaagagacttggccgcgttgcgccggccggttggaaatcgccgtgcag
tggatggacgaggctgcggtatcgaccatccatggctggtgccagcgcatgctgcgcgag
catgccttcgacagcggcagcctgttcacccagaccctggaaaccgaccacagcgagttg
ttgggccaggttatgcgcgattactggcggcgcttctgctatgggatgcaaggtgacgca
ctggcctgggtgcgcggcaactgggggagccccgacgctttgctgccacgcattcgccca
ctgttcggccgtgtgcgcgcccagcagaatgggccagagcccgctgcgttgatccaggca
tcgctgcagcaacgtggcgcacagttggcccggatcaaggcgccatgggcacagtgggcc
gaggaactgcggcaaatctgccgcgatgcgctggccgccaaacaggtcgacggccgcaag
atgcaagcccgttacttcgagccctggttcgacaagctctgcgcttgggccagcgatgag
caactggtagagctcgacttgggcactggctttacgcggctgaccccgacgggcatggcc
gaggcctggaagggagaacctcccgagcacccagccctcaacgccatgcagcacttgcag
cagcaactgcaggcactggacagcccggatgctccgctgctcgagcacgccgccagttgg
gtatcggcgcgtttcgaagtggagaagcgccggcgtgcagaaatgggcttcgacgacatg
ctcgtgcgcttgcagcacgcgctcgccagcgaggccggcgagcgcctggccagcctgatc
cgtgagcagttcccggtagcgctgatcgacgaattccaggacaccgacccggttcagtac
ggcattttcgagcgcatctaccagatcagcgaaaaccgcgcagaaaccggcctgttcatg
atcggcgaccccaagcaggcgatctacgccttccggggtgccgacatctacacctacctt
gccgcgcgacgcgctaccagcggccgcctgcacagcctggacaccaactaccgctccagc
aaagccatggtggcggcggtcaaccaggtgttcctgcaggccgaggcgcgtgaagcgggg
cggggtgcattcctgttccgcgaggccgatgacaacccgctgccattcatcgaggtgcgc
gccaaggggcgtggcgaacagctgctgattgacggtgaagtcagtgcagccctgcaatgc
tggcagctggaaagtgaagagccagtctccagcagcgtttaccgccagcaactggccgcc
agttgcgccagccatattgtggccttgctcaatggcggccagcagggcacggcgggtttc
cagaatgccgaaggcgaattgcgcgcttgcttgccctcggacatcgccatcctggtgcgc
gatggtcatgaggcgcagatggtccgcgccgaactggccgcacgcggggtgcgcagcgtc
tacctgtctgacaaggactcggtgtttgccgcccaggaagcccacgacctgctggcctgg
ctgaaggcctgcgccgagcctgactcagagcgcctgctcaaggctgctttggccagcctt
acactgggcctgtcgctggctgcgctggaccggcttaaccaggacgagcgggtctgggaa
agctgggtgatgcgttttcgcctgtaccgcgacacctggcagcgccagggggtgttgccg
atgttgcgccacttgctgcatgacttccagctaccgcgcacgctgatccgccgcagtgat
ggcgagcgggtgctgaccaacctgctgcacctggccgagctgctgcagcaggccgccggc
gagctggacggcgaacaggcgcttatccgccacctggccgagcacctcgccagttccggt
caggccggtgaagagcagatcctgcgcctggagagcgacgaacagttggtcaaggtggtg
accatccacaagtccaagggcctggaatatcccttggtctacctgccattcatctgcacc
agcaaaccggtggatggtagccgtctgccgctggcctggcatgacagcgaaggtaatgcc
cacctcaccctcacacccgatcaggagcagatagagcgagctgacgacgagcgcctggcc
gaagacctgcgcctgctctacgtggccctgacccgcgcccagcatgcttgctggctgggt
gttgccgacctcaagcgcggtaatttgaagagctcgcagctgcaccgctcggcgtttggc
tacctgctgggggcggccttgccttggctggttcggcgcagctga
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