Pseudomonas putida BIRD-1: PPUBIRD1_4374
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Entry
PPUBIRD1_4374 CDS
T01975
Symbol
recC
Name
(GenBank) RecC
KO
K03583
exodeoxyribonuclease V gamma subunit [EC:
3.1.11.5
]
Organism
ppb
Pseudomonas putida BIRD-1
Pathway
ppb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ppb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
PPUBIRD1_4374 (recC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppb03400
]
PPUBIRD1_4374 (recC)
Enzymes [BR:
ppb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
PPUBIRD1_4374 (recC)
DNA repair and recombination proteins [BR:
ppb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
PPUBIRD1_4374 (recC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_V_gamma
RecC_C
Motif
Other DBs
NCBI-ProteinID:
ADR61947
LinkDB
All DBs
Position
complement(4875857..4879339)
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AA seq
1160 aa
AA seq
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MLNTAHLHPGFMIVHGNRLDDLRSLVVSWMRRYPLAPLENEIALVQSNGIAQWLKLALAE
DPLEDDQGGCGIAAAIDVQLPGSFMWQLYRSVLGRSEIPEVSLLDKAPLTWRLMRLLPAL
IERPHFEPLRRFLTDDSDLRKRYQLAERLADLFDQYQVYRADWLKDWATGEHAINTARGE
RKVLPPGNRWQAELWRALLEDVGEQGMAQSRAGVHQRFIERINSLEQAPAGLPPRVIVFG
ISSLPAQALEALAGLSRFSQVLLCVHNPCRHHWADIVADKDLLRHQYKRQQRKQGMPLQL
DDQTLHQHAHPLLAAWGKQGRDYINLLDSYDDPGSYQGVFSDGRIDLFSDGSPTTLLNEL
QDDILELRPLAESRERWPPVDTTKDRSIRFHIAHSPQREVEILHDQLLARFSADPTLRPR
DVIVMLPDIDTYAPHIRAVFGQLQRNDPRYIPFTLTDQGQRGREPLLIALEHLLKLPDSR
FAVSEVLDLLDVPAVRARFGIRENDLPTLHRWIEGAGIRWGLDAEQRASLGLPAGLEQNS
WRFGLRRMLLGYAVGVGEACDGIEPYDEIGGLDAALIGPLVALLDALEVACQALSEPATV
SQWGERLHALLHVFFLAEDEGDEFLLMQLQDLRDSWLEVCETVGLHDPLPLTVVREAWLS
GLDQGKLSQRFLAGSVNFCTLMPMRAIPFRVVCLLGMNDGDYPRAQPPLDFDLMASDYRP
GDRSRREDDRYLLLEALLSARDQLYVSWVGRSIRDNSERPASVLIGQLRDHIAAGWHLAD
AQQGQPAKPGEQLLHALTQEHPLQPFSPRYFQKGSPLFSYAHEWQVLHQQGEADEQSEPG
LPPYQDAEALSLHQLNDFLRHPVRHFFSQRLKVYFEALEAPTPDEEPFVLDTLQRYGASE
SLLGAALAEPDNAEQALRAQARRLQACGLLPLAGFGELLQNELIEPLPDLLQRHQQLLQR
WPQLVEGALPVHFEHGQHRLEGWLGRVFQAEDQSLLSITTVPNTISAGRNNLKWHRLIAP
WVTHLAACAAGYPYNSALVASDLTLLLAPLPQALAAQLLGDLLVARQAAMNAPLPVAAKT
AFAWLAQDDAVKAMAAAARAYEGDERTSFGERSESIALARQFRDFAALTADETFEGWCET
LYRPLFTAPWQTLGNPEKGA
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atgctcaacaccgcccatctccatcctggcttcatgatcgtccacggcaaccgcctcgac
gacctgcgtagcctggtagtgagctggatgcgtcgctacccgctggcgcctctggaaaac
gaaattgccctggtgcaaagcaatggcatcgcccaatggctcaagctggccctggctgaa
gatccgctggaagatgaccaaggcggctgcggcatcgccgctgcaatcgatgtacaactt
cccggtagctttatgtggcagctctaccgcagcgtgcttggccgtagcgaaattcccgaa
gtgtctctgctcgacaaggcaccactgacctggcggctgatgcgcctgttgccagcgctc
atcgagcgcccgcatttcgagccactgcggcgcttcctcaccgacgacagtgacttgcgc
aagcgctaccagctcgccgagcgcctggccgacctgttcgaccagtaccaggtctaccgt
gccgattggctcaaggactgggccactggtgagcacgccatcaacacggcccgcggcgag
cgcaaagttttgccgccaggcaaccgctggcaagccgagttgtggcgagcattgctggag
gatgttggcgagcaaggcatggcgcaaagccgcgccggggtacaccaacgtttcatcgag
cgcatcaacagcctggagcaggcgcctgcagggctgccaccgagggtgatcgtgttcggt
atctcttcgctgccggcccaggccctggaagcgctggcaggcctgtcgcgtttcagtcag
gtattgctgtgcgtacacaacccatgccgccaccactgggccgatatcgtcgccgacaag
gacctgctgcgccaccagtacaaacgccagcaacgcaagcaaggcatgcccctgcaactg
gacgaccagacgctgcaccagcatgcccacccgttgctggcagcctggggtaaacaaggc
cgcgactacatcaacctgctcgacagctatgatgacccaggcagctatcagggcgtgttc
agcgacggccgcatcgacctgttcagcgacggttcgcccaccacgctgctcaacgaactg
caggacgacatcctggaattgcgcccgctcgccgagagccgcgaacggtggccgccagtc
gacaccacaaaagaccgctcgatccgcttccatatcgcgcacagcccgcaacgtgaagtg
gagatcctccacgaccagctgttggcccgcttcagcgccgacccgactttgcgcccgcgc
gacgtgatcgtcatgctgccggacatcgacacttatgcgccgcatatccgcgccgtcttc
ggccagttgcagcgcaacgacccgcgctacatcccgttcaccctgacagaccaaggccag
cgtggtcgcgagcctttgctgattgcgcttgagcacctgctcaaactgcctgacagccgc
ttcgcggtcagcgaagtgctcgacctgctggacgtgccggcagtccgcgcccgcttcggc
atccgcgaaaacgacctgcccaccctgcaccgctggatcgagggcgctggcatccgttgg
ggccttgacgccgagcagcgggcgagcctgggcttgcccgccgggcttgaacagaacagt
tggcgtttcggcctgcgccgcatgctgttgggttatgccgtgggggtgggtgaggcctgt
gatggcattgaaccctacgatgaaatcggtggcctggacgcggcactgatcggcccgctg
gtcgcgttgctcgatgcgctcgaagtcgcctgccaggccctgtccgagcctgccaccgtc
agccagtggggcgagcgactacatgccttgctgcacgtgttcttcctcgccgaggacgag
ggtgatgaattcctgttgatgcagttgcaggatctgcgtgatagctggcttgaggtgtgc
gagaccgtcggcctgcacgaccccctaccgcttaccgtggtgcgtgaagcctggctgtcg
ggcctcgatcagggcaagctgtcgcaacgtttcctcgccggctcggtcaacttctgcaca
ctcatgcccatgcgcgcgatcccgttcagggtggtctgcctgctgggcatgaacgatggc
gactacccgcgtgcgcagccaccgctagacttcgacctgatggccagcgactatcgcccc
ggcgaccgctcacgccgcgaagacgaccgttacctgttgcttgaagcgctactgtcagca
cgtgatcaactgtatgtcagctgggtcgggcgcagtatccgcgacaatagcgaacgcccg
gcctcggtgctgatcggccagttgcgcgatcacatcgctgcgggttggcatttggccgac
gcgcagcagggccagcccgcgaaaccgggcgagcaactgttgcacgcactgacccaggag
cacccgctgcagccgttcagccctcggtacttccagaagggcagcccactgttcagctat
gcccatgaatggcaggtgctgcaccagcagggtgaggcagacgagcagagcgagccgggc
ttgccgccttatcaggacgctgaagccctgagtctgcaccagctgaatgacttcttgcgc
catccggtacggcacttcttcagccagcgtttgaaggtgtactttgaggcgctggaagcg
ccgaccccggacgaagagcccttcgtcctcgataccctgcaacgctacggcgccagtgaa
agcctgcttggcgccgccttggccgaaccggacaacgccgaacaggccttgcgcgcccag
gcccgacggctgcaggcctgcggtttgctgccgctagcaggtttcggcgaactgctgcaa
aacgagttgatcgaaccgctgccggacctgctgcaacgtcaccagcaattgctgcaacgc
tggccacagctggtcgagggcgctttgccggtgcatttcgagcacggtcagcaccgtctg
gagggctggctggggcgggtgttccaggcggaagatcagagccttctcagcatcaccaca
gtacccaacaccatcagtgccgggcgcaacaacctcaagtggcaccgccttatcgcgccc
tgggttacgcatttggcggcctgtgcagcgggctacccctataacagtgcattggtagcc
agtgacctgaccctgttgcttgcaccgctgccgcaagcgctggccgcgcaactgctgggc
gacctgttggtggcccgtcaggcggcaatgaatgcgccgttgccagtcgcggccaagacc
gcgttcgcctggttggcccaggacgatgccgttaaagccatggccgcagcagctcgcgcc
tacgaaggcgacgaacgcaccagctttggcgagcggagtgaaagcattgccttggcccgc
cagttccgggactttgcagcactcactgctgacgaaacgtttgaaggctggtgcgaaacc
ttgtatcgcccgttgttcaccgccccttggcagaccttgggcaacccggagaaaggcgca
tga
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