Pseudomonas putida BIRD-1: PPUBIRD1_4411
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Entry
PPUBIRD1_4411 CDS
T01975
Symbol
truB
Name
(GenBank) TruB
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
ppb
Pseudomonas putida BIRD-1
Brite
KEGG Orthology (KO) [BR:
ppb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ppb03016
]
PPUBIRD1_4411 (truB)
Enzymes [BR:
ppb01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
PPUBIRD1_4411 (truB)
Transfer RNA biogenesis [BR:
ppb03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
PPUBIRD1_4411 (truB)
Prokaryotic type
PPUBIRD1_4411 (truB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
TruB-C_2
PUA_3
HTH_CodY
Motif
Other DBs
NCBI-ProteinID:
ADR61984
LinkDB
All DBs
Position
complement(4927096..4928013)
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AA seq
305 aa
AA seq
DB search
MAQVKRIRRNVSGIILLDKPLGFTSNAALQKVRWLLNAEKAGHTGSLDPLATGVLPLCFG
EATKFSQYLLDSDKGYETVMQMGQTTNTGDAEGEVLQTRDLTVGRADIEALLPRFRGPIS
QIPPMYSALKRDGQPLYKLARAGEVVEREARSVTINRLELLECEGTRARLSVGCSKGTYI
RTLVEDIGEALGCGAYVAELRRTQAGPFALAQTVTLEELEQAHAEGGNEALDRFLMPSDS
GLQDWPLVSLSEHSAFYWLHGQAVRAPDAPQFGMVRVQDHNARFIGIGEVSEDGRIAPRR
LIRSE
NT seq
918 nt
NT seq
+upstream
nt +downstream
nt
gtggcccaggtcaaacgtatccgccgcaatgtcagcggcatcatcctgctcgacaagccg
ctgggcttcacgtccaatgccgccttgcagaaagtgcgttggctgctgaacgcggaaaag
gccggccataccggtagcctcgacccactggcaaccggcgtgttgccgctgtgcttcggt
gaagcgaccaagttttcgcagtacttgctggattccgacaagggctacgaaaccgtcatg
cagatggggcagactaccaacaccggcgatgccgagggtgaggtgctgcagacccgcgac
ttgaccgttggtcgcgccgacatcgaagcactgctgccacgttttcgcggcccgatcagc
cagataccgcctatgtactcggcgctcaagcgtgacggccagccgttgtacaagctggca
cgtgcaggagaggtagtggagcgcgaggcgcgttctgttactattaaccgcttggagttg
ctcgagtgcgaaggcacccgtgcccggctgagcgtaggatgcagcaaaggcacctatatc
cgcacgctggtggaggatatcggtgaagcccttggttgcggcgcctatgtcgccgagctg
cgcaggacccaggcagggccctttgcgctggcacagacggtcaccctcgaggaactcgaa
caggcccatgccgaaggtggcaacgaagcgctcgaccgcttcctgatgccatcggacagc
gggctgcaggactggccgttggtcagcctgtcggaacacagtgcgttctactggctgcat
ggccaggcggtacgcgcgccggacgcgccacaatttggcatggttcgggtacaggatcac
aatgcacgcttcatcggtatcggtgaagtgagcgaagacgggcgcattgcgccgcgtcgg
ctaattcggtcggaatga
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